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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTGTTGTCAGCCTTTGAATGCCCACATTGTGGTGAGAGgtaaactaaaattttcattaaggctgtgagggtttcaaattatatagatcaattgaaatttggccttttataagagatttaatctattgttgttgtttttccctcag

Basic information

species Vitis vinifera
transcript Vv01s0011g01690.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G351582_T01 (Zea mays), 5'ss of exon 4
ATATTGTTGTCAGCCTTTGAATGCCCACATTGTGGTGAGAGgtaaactaaaattttcattaaggctgtgagggtttcaaattatatagatcaattgaaatttggccttttataagag--atttaatctattgttgttgtttttccctcag
 |  |  ||   ||||| || ||||||||||||||||||||||||    | ||   ||   |     ||    ||  || || |  || |||||    | | |   |  ||  |  |  ||| || | ||       |||     |||  
GTGGTTCTGATGGCCTTCGAGTGCCCACATTGTGGTGAGAGgtaa--cgatatgccca---aattcttgtttattggaatttgtccaggtcaatgattagtagagatactaccaaggttattaaaacgataa--aacgttgaaagctc--

upper sequence: Vv01s0011g01690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G02690.1 (Glycine max), 5'ss of exon 3
ATATTGTTGTCAGCCTTTGAATGCCCACATTGTGGTGAGAGgtaaactaaaattttcattaaggctgtgagggtttcaaattatatagatcaattgaaatttggccttttataagagatttaatctattgttgttgtttttccctcag-----------------
|| ||||||||||| |||||||| ||||| ||||||||||||||||| |    |||  |  | ||  |      || ||| | |  | || ||   || |    ||||| ||      |  || ||| | || |||||||                         
ATTTTGTTGTCAGCTTTTGAATGTCCACACTGTGGTGAGAGgtaaac-atccctttagtctatgccctcct--cttaaaactgtgca-atgaacataagtggtccctttgatcttccttggaagctaatatttttgttttctaaattattgttttgatctgttag

upper sequence: Vv01s0011g01690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G34890.1 (Glycine max), 5'ss of exon 3
ATATTGTTGTCAGCCTTTGAATGCCCACATTGTGGTGAGAGgtaaactaaaattttcattaaggc----tgtgagggtttcaaattatata-gatcaattgaaatttggccttttataagagat-------ttaatctattgttgttgtttttccct--cag
|| ||||||||||| |||||||| || || |||||||||||||| || |   |||    || | |    | | |    |    |||  | |  ||  ||     ||||  |||   | | |  |       ||  | | |  || ||||||||  ||   ||
ATTTTGTTGTCAGCTTTTGAATGTCCCCACTGTGGTGAGAGgtagacgaccctttagtctatgccctcctcttaaaactgtgcattgaacataattgatccc--tttgatcttccttgaaaactaatatttttgttttctaattattgtttttatctgttag