1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTACTTCTTGAATGTAATTTTCAACATACTTAACAAGAAGGTTTATAATTATTTCCCATACCCATAgtaagttatctttgctaaacctttgtcaatttaaccttttacagattcatgttttgaaaatacgattctcgttaacaattagatcatcttttcccccattgcag
species | Vitis vinifera |
transcript | Vv01s0011g00600.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTTCAACATACTTAACAAGAAGGTTTATAATTATTTCCCATACCCATA CTTTGTTTCCCTTATACATCTCCTTGTGGGCGTGGCCTACTGTCTTGTCAGEST: gi|37183970|gb|CF603324.1|CF603324
genomic: ATTTTCAACATACTTAACAAGAAGGTTTATAATTATTTCCCATACCCATAgtaagttatc ... cccattgcagCTTTGTTTCTCTTATACATCTCCTTGTGGGCGTGGCCTACTGTCTTGTCAG
EST: ATTTTCAACATACTTAACAAGAAGGTTTATAATTATTTCCCATACCCATA CTTTGTTTCTCTTATACATCTCCTTGTGGGCGTGGCCTACTGTCTTGTCAGEST: gi|351034668|gb|FQ458025.1|FQ458025
genomic: ATTTTCAACATACTTAACAAGAAGGTTTATAATTATTTCCCATACCCATAgtaagttatc ... cccattgcagCTTTGTTTCTCTTATACATCTCCTTGTGGGCGTGGCCTACTGTCTTGTCAG
EST: CAACATACTTAACAAGAAGGTTTATAATTATTTCCCATACCCATA CTTTGTTTCTCTTATACATCTCCTTGTGGGCGTGGCCTACTGTCTTGTCAGEST: gi|56409591|gb|CX017843.1|CX017843
genomic: CAACATACTTAACAAGAAGGTTTATAATTATTTCCCATACCCATAgtaagttatc ... cccattgcagCTTTGTTTCTCTTATACATCTCCTTGTGGGCGTGGCCTACTGTCTTGTCAG
EST: ATTTTCAACATACTTAACAAGAAGGTTTATAATTATTTCCCATACCCATA CTTTGTTTCCCTTATACATCTCCTTGTGGGCGTGGCCTACTGTCTTGTCAG
genomic: ATTTTCAACATACTTAACAAGAAGGTTTATAATTATTTCCCATACCCATAgtaagttatc ... cccattgcagCTTTGTTTCTCTTATACATCTCCTTGTGGGCGTGGCCTACTGTCTTGTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTTCTTGAATGTAATTTTCAACATACTTAACAAGAAGGTTTATAATTATTTCCCATACCCATAgtaagttatctttgctaaacctttgtcaatttaaccttttacagattcatgttttgaaaatacgattctcgttaacaattagatcatcttttcccccattgcag
- - - - - - - - - - - - - - - - - AAGAAG