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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTGGGAATCAGTTGGTCAAATGGGAGGCTAAGGTTGAAGAAGATCTCGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttctatcttctatgctgctaatctctattcttcttattttctcactccttcggctttagctaaagattgattaagccatatcctatgctagat...

Basic information

species Vitis vinifera
transcript Vv01s0010g03830.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g03830.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G09520.2 (Glycine max), 5'ss of exon 2
GTTTTTGGGAATCAGTTGGTCAAATGGGAGGCTAAGGTTGAAGAAGATCTCGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttctatcttctatgctgctaatctctattcttcttattttctcact-ccttcggctttagctaaagattgattaagccatatcctatgctagat---
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GTATTTGTGAACCAGCTTCTCAAATGGGAGGCCCAAGTGGAGCAAGACCTCGACAAGATGCTCGAAAAGGCCAAAGCCGCCAACGAAAGACGTTACATAGgttccccttttcttttcaat----ccaaactatgtaacgaaagacgctgcatagtcttctgctttatgttttaagtgattaggatgatgaataatttggtttta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415710|gb|EC981640.1|EC981640
EST:     CGATAAGTTGCTCGAAAAGGCCAAAGCTGCCAATGAGCGCCGTTATATTG                         ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: gi|110415766|gb|EC981699.1|EC981699
EST:     CGATAAGTTGCTCGAAAAGGCCAAAGCTGCCAATGAGCGCCGTTATATTG                         ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: gi|110392482|gb|EC957934.1|EC957934
EST:     CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG                         ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: gi|27586450|gb|CB009145.1|CB009145
EST:     CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG                         ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: gi|110402841|gb|EC963595.1|EC963595
EST:     CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG                         ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: gi|33408889|gb|CF214516.1|CF214516
EST:     CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG                         ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: gi|110409821|gb|EC975493.1|EC975493
EST:     CGATAAGTTGCTCGAAAAGGCCAAAGCTGCCAATGAGCGCCGTTATATTG                         ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: gi|110694543|gb|EE071739.1|EE071739
EST:     CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG                         ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: gi|110371366|gb|EC935335.1|EC935335
EST:     CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG                         ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
EST: gi|110721737|gb|EE097352.1|EE097352
EST:     CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTG                         ATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC
genomic: CGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttc ... tcaattgcagATGCTGACGAAGATTAGCAGTCAGGTTGGCTAGGACTATAAGATATTTTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTTGGGAATCAGTTGGTCAAATGGGAGGCTAAGGTTGAAGAAGATCTCGATAAGTTGCTCGAAAAGGCCAAAGCCGCCAATGAGCGCCGTTATATTGgtactctttctatcttctatgctgctaatctctattcttcttattttctcactccttcggctttagctaaagattgattaagccatatcctatgctagat

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