1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AACAGTTAGAGGGTTTACTGCAATTGGAACTGGAGGTGACGATTTTGTGCAAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAGgtacatagatcacttgttgcaaatgtttttgttgactaagatgttttctagtttatgcattgatacatccaaggaaataaactttaaggtgaccatttaa...
species | Vitis vinifera |
transcript | Vv01s0010g03660.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAG GGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAATEST: gi|71865879|gb|DT014934.1|DT014934
genomic: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAGgtacatagat ... ttacaaacagGGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAAT
EST: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAG GGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAATEST: gi|351049495|gb|FQ429117.1|FQ429117
genomic: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAGgtacatagat ... ttacaaacagGGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAAT
EST: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAG GGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAATEST: gi|110721250|gb|EE098032.1|EE098032
genomic: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAGgtacatagat ... ttacaaacagGGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAAT
EST: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAG GGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAATEST: gi|110381227|gb|EC946549.1|EC946549
genomic: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAGgtacatagat ... ttacaaacagGGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAAT
EST: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAG GGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAATEST: gi|110420849|gb|EC987134.1|EC987134
genomic: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAGgtacatagat ... ttacaaacagGGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAAT
EST: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAG GGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAATEST: gi|161712789|gb|FC062013.1|FC062013
genomic: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAGgtacatagat ... ttacaaacagGGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAAT
EST: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAG GGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAAT
genomic: AAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAGgtacatagat ... ttacaaacagGGCCATGTAAAGCAGAAACTATCATCAAGAGGCAAATATGTATCAGTAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAGTTAGAGGGTTTACTGCAATTGGAACTGGAGGTGACGATTTTGTGCAAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAGgtacatagatcacttgttgcaaatgtttttgttgactaagatgttttctagtttatgcattgatacatccaaggaaataaactttaaggtgaccatttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa