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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAACGTTGTCAAGTTGAGAGCTTACTATTGGGCTCCTGATGAGAAGCTCCTGATTTCGGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTCCGAGgtaaccttcctaaatttttccttcacgtgtgaattcacaattttttctgcgttttcctaattaccaattttagaatgtgtagttccttaaatattattta...

Basic information

species Vitis vinifera
transcript Vv01s0010g02910.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G19200.1 (Glycine max), 5'ss of exon 1
CCCAACGTTGTCAAGTTGAGAGCTTACTATTGGGCTCCTGATGAGAAGCTCCTGATTTCGGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTCCGAGgtaaccttcctaaatttttc-cttcacgtgtgaattcacaattttttctgcgttttcctaattaccaattttagaatgtgtagttccttaaatattattta
|||||| |||| ||||||||||| || |||||||||||||||||||||||  ||||    |||||||||||||||||||| ||||| | ||| ||  ||||| |      |   | |||| | |   ||     ||    |||||| |      ||     | |   |||||   |  | |  | | | |   |||| |  
CCCAACATTGTGAAGTTGAGAGCATATTATTGGGCTCCTGATGAGAAGCTTTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGgttagtcagttctttctttcacattctgttcatgtttttcatttttgcctttggttttgggtcattgattttgtta-atttgttgcatcagtgattaatgg

upper sequence: Vv01s0010g02910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G43730.1 (Glycine max), 5'ss of exon 1
CCCAACGTTGTCAAGTTGAGAGCTTACTATTGGGCTCCTGATGAGAAGCTCCTGATTTCGGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTCCGAGgtaaccttcctaaatttttccttcacgtgtgaattcacaattttttctgcgttttcctaattaccaattttagaatgtgt-agttccttaaat--attattta--
|||||| |||| | ||| ||||| || |||||||||||||||||||||||| ||||    |||||||||||||||||||| ||||| | ||| ||  ||||| |       |  | |||| ||||| ||    ||||   |||  | |  |  ||     ||     |  | || | ||| | ||  ||  ||  | |  ||   
CCCAACATTGTGAGGTTAAGAGCATATTATTGGGCTCCTGATGAGAAGCTCTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGgtcagtg----agttctttctttcacatgctg-ttcatgttttcatttttgccttttcttttttgggtcattgattttgttaatttgttgcattcactgattggg

upper sequence: Vv01s0010g02910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G06320.1 (Glycine max), 5'ss of exon 1
CCCAACGTTGTCAAGTTGAGAGCTTACTATTGGGCTCCTGATGAGAAGCTCCTGATTTCGGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTCCGAGgtaaccttcctaaatttttccttcacgtgtgaattcacaattttttctgcgttttcctaat-taccaattttagaa----tgtgtagttccttaaatattatt-ta--
|| || ||||| | |||||| |||||||||||||| | |||||||||||| || ||    |||||||||||||||||||| |||||| |||| ||  ||||| |  |       ||| |  ||||| | | | ||    ||| ||| || |||      || |     | |  |||    | | |||    | || | ||||| ||  
CCTAATGTTGTGAGGTTGAGGGCTTACTATTGGGCACATGATGAGAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAATTTGGCTCATGCCCTTAGAGgttagttct-----tttctgtttcactttttagtt---gattgtttttgggttaaaaagatattttggtctcggaaagtgtatatagactataaactgttattatagt

upper sequence: Vv01s0010g02910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G31480.1 (Glycine max), 5'ss of exon 1
CCCAACGTTGTCAAGTTGAGAGCTTACTATTGGGCTCCTGATGAGAAGCTCCTGATTTCGGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTCCGAGgtaaccttcctaaatttttccttcacgtgtgaattcacaattttttctgcgttttcctaattac--caattttagaa--tgtgtagttccttaaatattattta
|| || ||||| | |||||| |||||||||||||| | |||||||||||| || ||    |||||||||||||||||||| ||| || |||| ||  ||||| |  ||| |   ||| |  ||||| | | | ||    ||||||| ||   |    | || |    | | |  |||  ||| |||         || | ||| 
CCTAATGTTGTGAGGTTGAGGGCTTACTATTGGGCACATGATGAGAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAATTTGACTCATGCCCTTAGAGgttag-ttcttttctttctgtttcactttttagtt---gattttttttggactaaaatgatcattttagtctatgaaattgtatagactacacgttagtctttg

upper sequence: Vv01s0010g02910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G67510.1 (Arabidopsis thaliana), 5'ss of exon 1
CCCAACGTTGTCAAGTTGAGAGCTTACTATTGGGCTCCTGATGAGAAGCTCCTGATTTCGGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTCCGAGgtaaccttcctaaatttttccttcacgtgtgaattcacaattttttctgcgttttcctaattaccaattttagaatgtgt---agttccttaaatattattta
|| || || || ||||| |||||||| |||||||||||||||||||||||  |||||   || ||| |   |||||| |  || ||| |||||||  ||||||   | | | | || |||||||   | |   | |  |     ||   |   |  ||||      |  |  |  | |||   | |  |||||  | | | | 
CCTAATGTGGTGAAGTTAAGAGCTTATTATTGGGCTCCTGATGAGAAGCTTTTGATTAGTGACTTCGTTAACAATGGAAGTTTAGCTGATGCTCTTAGAGgta--ttacattacttcttccttcttctttttctgcttatcgaattagtctactaactaaagtttgagatccggttctgttctattgacttaagaaatttat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868615|gb|DT017670.1|DT017670
EST:     CCTGATTTCGGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTCCGAG                         GGAGAAGTGGACAGCCATCATCGAGCCTCTCATGGTCAACCAGGCTGAAAA
genomic: CCTGATTTCGGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTCCGAGgtaaccttcc ... aattttacagGGAGAAGTGGACAGCCATCATCGAGCCTCTCATGGTCAACCAGGCTGAAAA