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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGAAGCCAGCAAAGGGAACAACAACTCTTGCCTTCATTTTTAAGGAGGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagtttttttttgttcttacttggttcattttgaggaagatatatttatactgtttagattagttaggattagtggaccatataaacctgttcatgaa...

Basic information

species Vitis vinifera
transcript Vv01s0010g02900.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G17960.1 (Glycine max), 5'ss of exon 3
ATGGTGAAGCCAGCAAAGGGAACAACAACTCTTGCCTTCATTTTTAAGGAGGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagtttttttttgttcttacttgg---------ttcattttgaggaagatatatttatactgtttagatta---gttaggattagtggaccata--taaacctgttcatgaa-----------------------
||||||||||| || ||||| || || |||||||| || || |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||| ||| ||| ||  || | ||||           ||| || |      | |  ||    | | ||||  |||   ||||   |||        |   |     ||||| ||||                       
ATGGTGAAGCCCGCGAAGGGTACTACGACTCTTGCTTTTATATTTAAGGAGGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccag

upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G37030.3 (Glycine max), 5'ss of exon 3
ATGGTGAAGCCAGCAAAGGGAACAACAACTCTTGCCTTCATTTTTAAGGAGGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagtttttttttgttctta------------------cttggttcattt---tgaggaaga------tatatttatactgtttagattagttaggattagtggaccatataaacctgt-tcatgaa---------------------------------
||||||||||| || ||||| || ||||||||||| || || ||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||| ||| ||| || | | |||                  ||| |||| |||   ||||| |||      | | ||| | ||  ||     |  |   | |  |||    |||  |  ||  |  ||                                   
ATGGTGAAGCCCGCGAAGGGTACTACAACTCTTGCTTTTATATTTAAAGAGGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtatttgttagattttaatttcatttttcactgttctttgttcctttggctgaggcagagttttttgtttttgtgctaattgctgcaaattaaaatgatgggttttatctatttgcattgtgtttgatcttgaattctgactgttggctgtctccag

upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G26340.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGGTGAAGCCAGCAAAGGGAACAACAACTCTTGCCTTCATTTTTAAGGAGGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagtttttttttgttcttacttggttca---ttttgaggaagatatatttat--actgtttagattagt-taggattagtggaccatataaacctgttcatgaa
||||||||||| |||||||| ||||| || ||||| || || |||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||| | |||  |  |  ||  ||||   || ||     | | || || |   || | || |  |   ||  | | | | |  |  || |    |       
ATGGTGAAGCCTGCAAAGGGTACAACTACACTTGCGTTTATCTTTAAGGAAGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATCTgtatgtttctcttttgttatgtttatttcagatttctgtttgtgttttagttgtgagctctctaaaggatcctaaaaatggagaatgagttagattcttg------

upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G13060.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGGTGAAGCCAGCAAAGGGAACAACAACTCTTGCCTTCATTTTTAAGGAGGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagtttttttttgttcttacttggttcattttgaggaagatatatttatactgtttagat-tagttaggattagtggaccatataaacctgttcatgaa
||| ||||||  ||||| |||||||| ||||| || || || || || |  ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| ||| | |||| |   |      ||  |||||        |  || |   ||||||| | |        |||      | |  |||  | | |||   
ATGTTGAAGCATGCAAAAGGAACAACCACTCTCGCTTTTATCTTCAAAGGTGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTgtatgttctcttttatcactttacttttagttttgtttgcag-actttgacgatgtttagctgtgagctctcttaagaattcctccaaaaatatgcatcct

upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G13060.2 (Arabidopsis thaliana), 5'ss of exon 3
ATGGTGAAGCCAGCAAAGGGAACAACAACTCTTGCCTTCATTTTTAAGGAGGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagtttttttttgttcttacttggttcattttgaggaagatatatttatactgtttagattagttaggattagtggaccatataaacctgttcatgaa
||| ||||||  ||||| |||||||| ||||| || || || || || |  ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| ||| | |||| |   |      ||  |||||        |  || |   |||||||                                        
ATGTTGAAGCATGCAAAAGGAACAACCACTCTCGCTTTTATCTTCAAAGGTGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTgtatgttctcttttatcactttacttttagttttgtttgcag-actttgacgatgtttag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351020097|gb|FQ445704.1|FQ445704
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110697158|gb|EE073899.1|EE073899
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110377163|gb|EC942221.1|EC942221
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAAGAAAATTATTGAAATTAATCCCTACATGCTTGGC
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTG-AAGAAAATTATTGAAATTAATCCCTACATGCTTGGC
EST: gi|110416438|gb|EC982420.1|EC982420
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|71856922|gb|DT005977.1|DT005977
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|71862964|gb|DT012019.1|DT012019
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110687524|gb|EE065028.1|EE065028
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110400292|gb|EC966850.1|EC966850
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|156735848|gb|EV239969.1|EV239969
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|294966461|gb|GW839568.1|GW839568
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110698339|gb|EE075751.1|EE075751
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110361238|gb|EC924696.1|EC924696
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|71864543|gb|DT013598.1|DT013598
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|71871573|gb|DT020628.1|DT020628
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110723155|gb|EE100145.1|EE100145
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|71857078|gb|DT006133.1|DT006133
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110727856|gb|EE105095.1|EE105095
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110733141|gb|EE109075.1|EE109075
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|71856981|gb|DT006036.1|DT006036
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110690175|gb|EE067043.1|EE067043
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|37184921|gb|CF604274.1|CF604274
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|37188874|gb|CF608223.1|CF608223
EST:     ATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: ATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110365001|gb|EC928674.1|EC928674
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|71862057|gb|DT011112.1|DT011112
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110367168|gb|EC931094.1|EC931094
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110401821|gb|EC968442.1|EC968442
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|351033347|gb|FQ446579.1|FQ446579
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110397717|gb|EC963560.1|EC963560
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|30131617|gb|CB916956.1|CB916956
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110364655|gb|EC928066.1|EC928066
EST:     CTGATTCTCGTGCTAGCAAGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: CTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110372494|gb|EC936666.1|EC936666
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|161720849|gb|FC069601.1|FC069601
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110691315|gb|EE069273.1|EE069273
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCGTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110397937|gb|EC963940.1|EC963940
EST:     CGTGCTAGCAT-GGAGGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: CGTGCTAGCATGGGA-GGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110732056|gb|EE107008.1|EE107008
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110726596|gb|EE102526.1|EE102526
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|37183791|gb|CF603145.1|CF603145
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
EST: gi|110368695|gb|EC932705.1|EC932705
EST:     GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCT                         CATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA
genomic: GGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagttttt ... atttttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGTGAAGCCAGCAAAGGGAACAACAACTCTTGCCTTCATTTTTAAGGAGGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTgtaagtttttttttgttcttacttggttcattttgaggaagatatatttatactgtttagattagttaggattagtggaccatataaacctgttcatgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaga