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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAGgtctgactgttgttaattcagtttgctctttttaattgttgattaactttgttattgttatcattattacaattacttttagaagtctatccagttgttagattgtttctaatctgttgcttgttgtggtatttttcttag

Basic information

species Vitis vinifera
transcript Vv01s0010g01740.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349816624|gb|FQ399613.1|FQ399613
EST:     GATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAG                         ATTATCCAACACATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACGACC
genomic: GATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAGgtctgactgt ... tttttcttagATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACC
EST: gi|110411137|gb|EC976839.1|EC976839
EST:     GAAATGTGCAGCGCCTGCATCCAGAG                         ATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACC
genomic: GAAATGTGCAGCGCCTGCATCCAGAGgtctgactgt ... tttttcttagATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACC
EST: gi|349823327|gb|FQ402526.1|FQ402526
EST:     GATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAG                         ATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACGACC
genomic: GATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAGgtctgactgt ... tttttcttagATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACC
EST: gi|161718299|gb|FC064760.1|FC064760
EST:     GATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAG                         ATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACGACC
genomic: GATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAGgtctgactgt ... tttttcttagATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACC
EST: gi|294965642|gb|GW837241.1|GW837241
EST:     GATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAG                         ATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACC
genomic: GATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAGgtctgactgt ... tttttcttagATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACC
EST: gi|349809177|gb|FQ398950.1|FQ398950
EST:     GATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAG                         ATTATCCAACATATCTGACTTGATATGCCAAGTCTTGCTTTCTTCACGACC
genomic: GATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAGgtctgactgt ... tttttcttagATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACC