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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAAAAACGGGAAAGGGTGGTAAAAGCAAGTCGAGATATCACCATTAATAGCAAAAAGGTCATATTTCAAGTGCACAGgtatccaaatgttcttcctctcctataggttctctacaagtcgcttgctagtcagtcttcctacttctgtcatgctcatgcataaccaagtacttcttcttggttattaattcagtctatgttgatgttgcaattttataaaaataacag

Basic information

species Vitis vinifera
transcript Vv01s0010g00580.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g00580.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G01340.1 (Glycine max), 5'ss of exon 3
AATGAAAAACGGGAAAGGGTGGTAAAAGCAAGTCGAGATATCACCATTAATAGCAAAAAGGTCATATTTCAAGTGCACAGgtatccaaatgttcttcctctcctataggttctctacaagtcgcttgctagtcagtcttcctacttctgtcatgctcatgcataaccaagtacttcttcttggttattaattcagtctatgttgatgttgcaattttataaaaataacag
||||| ||||| ||||| ||||| ||||||||||| ||| | || || ||||| || || ||||||||||||||||||||||   |      |||| |||  || |     |||      || ||  ||  ||  |||  |||  | | | ||    ||  |||   |  ||  | |   |   |||                                           
AATGACAAACGTGAAAGAGTGGTCAAAGCAAGTCGTGATGTAACAATGAATAGTAAGAAAGTCATATTTCAAGTGCACAGgttatc------tctttctccactgtcccccctccctctctctctctctc-tctctctctctatatatat-atatatatatatatatatatatatatatatatatata------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352791438|gb|FQ481017.1|FQ481017
EST:     AGTCGAGATATCACCATTAATAGCAAAAAGGTCATATTTCAAGTGCACAG                         AATCAGTAAAAACAACAAAGATGAAGTTCTGGATAAGGCAGTAAAGGATCT
genomic: AGTCGAGATATCACCATTAATAGCAAAAAGGTCATATTTCAAGTGCACAGgtatccaaat ... aaaataacagAATCAGTAAAAACAACAAAGATGAAGTTCTGGATAAGGCAGTAAAGGATCT
EST: gi|26257414|gb|CA808477.1|CA808477
EST:     AGTCGAGATATCACCATTAATAGCAAAAAGGTCATATTTCAAGTGCACAG                         AATCAGTAAAAACAACAAAGATGAAGTTCTGGATAAGGCAGTAAAGGATCT
genomic: AGTCGAGATATCACCATTAATAGCAAAAAGGTCATATTTCAAGTGCACAGgtatccaaat ... aaaataacagAATCAGTAAAAACAACAAAGATGAAGTTCTGGATAAGGCAGTAAAGGATCT
EST: gi|349830142|gb|FQ420402.1|FQ420402
EST:     CAAGTGCACAG                         AATCAGTAAAAACAACAAAGATGAAGTTCTGGATAAGGCAGTAAAGGATCT
genomic: CAAGTGCACAGgtatccaaat ... aaaataacagAATCAGTAAAAACAACAAAGATGAAGTTCTGGATAAGGCAGTAAAGGATCT
EST: gi|26257309|gb|CA808372.1|CA808372
EST:     AGTCGAGATATCACCATTAATAGCAAAAAGGTCATATTTCAAGTGCACAG                         AATCAGTAAAAACAACAAAGATGAAGTTCTGGATAAGGCAGTAAAGGATCT
genomic: AGTCGAGATATCACCATTAATAGCAAAAAGGTCATATTTCAAGTGCACAGgtatccaaat ... aaaataacagAATCAGTAAAAACAACAAAGATGAAGTTCTGGATAAGGCAGTAAAGGATCT