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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGCAAAGGTCATTGGGCGTCTAGGTCTTGAGAAGACCATGTTTGAAGCATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAGgtataacgcacttctgcttctcctgttctcccactactgcattaaatttttttgtatgttcatagcatcttaaccaatgacctataaatttag

Basic information

species Vitis vinifera
transcript Vv00s1274g00010.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s1274g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G30630.1 (Glycine max), 5'ss of exon 5
CATTGCAAAGGTCATTGGGCGTCTAGGTCTTGAGAAGACCATGTTTGAAGCATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAGgtataacgcacttctgcttctcctgttctcccactactgcattaaatttttttgtatgttcatagcatcttaaccaatgacctataaatttag----
|||||| ||| |||| ||||| || ||| |||||||||| |||||||||||||||| |      |  || |||||||| ||||| || |||||||| || ||| || || || ||      | |    ||     |  |  ||   ||||    |||||| | ||| || |   || |    | |   |||      
CATTGCCAAGATCATAGGGCGCCTTGGTATTGAGAAGACTATGTTTGAAGCATCAAATCAGAGAATATCCGAGTGGTTCATCAAACAATATGGTCCAAATgta-aatgctctactaaacaacttaaa-tcttgtcatagt-ttcccttttcgcttatgtt-acagcttcattgacattattatttggctttgttcag

upper sequence: Vv00s1274g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G06660.1 (Glycine max), 5'ss of exon 4
CATTGCAAAGGTCATTGGGCGTCTAGGTCTTGAGAAGACCATGTTTGAAGCATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAGgtataacgcacttctgcttctcctgttctcccactactgcattaaatttttttgtatgttcatagcatctt------aaccaatg---acctataaatttag
|||||| ||  |||| ||||| || ||| |||||||||| |||||||||||||||| |      |  || |||||||| ||||| || |||||||| |||||| || || || ||   |    || | ||     |  |  ||   ||||        |    | | | ||      | | ||||      ||| | ||| |
CATTGCCAAAATCATAGGGCGCCTTGGTATTGAGAAGACTATGTTTGAAGCATCAAATCAGAGAATATCGGAGTGGTTCATCAAACAATATGGTCCAAAGgta-aatgctctactaaataatttgat-tcttgtcatagttttcctttttaccaagaataagaaacttttttttattagcaaatgttagtttattagttttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110371140|gb|EC934927.1|EC934927
EST:     CATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAG                         GTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGA
genomic: CATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAGgtataacgca ... ataaatttagGTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGA
EST: gi|110363179|gb|EC926751.1|EC926751
EST:     CATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAG                         GTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGA
genomic: CATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAGgtataacgca ... ataaatttagGTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGA
EST: gi|27584195|gb|CB006890.1|CB006890
EST:     CATCAAGTGCCCAGACCTCTGAGTGGTTCATCAAGCATTATGGTCCCAAG                         GTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGA
genomic: CATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAGgtataacgca ... ataaatttagGTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGA
EST: gi|32246173|gb|CD711992.1|CD711992
EST:     CATCAAGTGCCCAGACCTCTGAGTGGTTCATCAAGCATTATGGTCCCAAG                         GTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGA
genomic: CATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAGgtataacgca ... ataaatttagGTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGA
EST: gi|71866679|gb|DT015734.1|DT015734
EST:     CATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAG                         GTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGA
genomic: CATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAGgtataacgca ... ataaatttagGTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGA