Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTAGATCGACCTGGAGTTTGCTTTTGTTCTCGAACAACTTATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAGgttgtttattatctttttttgtagtggtgttaaagtaattcatatctaaatacaggagctgacttgagctaaaattttgtccag

Basic information

species Vitis vinifera
transcript Vv00s1206g00020.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s1206g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G048045_T01 (Zea mays), 5'ss of exon 7
TATTTAGATCGACCTGGAGTTTGCTTTTGTTCTCGAACAACTTATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAGgttgtttattatctttttttgtagtggtgttaaagtaattcatatctaaatacaggagctgacttgagctaaaattttgtccag
 |  | |||||    ||  || | ||||| | ||||||||||||||| || |||||||| |||||||| || ||||| | | |||   | ||||   ||  | ||| | ||  ||  | || ||    |   | |||  | |||       | | |     |          ||||
CACCTTGATCGGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATGATGATAATGCTATTACAAATGCGGTTGAGATATTTAATACCTCTAGgtaacttcctctctgtgttactaaagatgctatctca--ccgtatgcacatattcattttaattctgtttttgcaccc--ccag

upper sequence: Vv00s1206g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G109039_T01 (Zea mays), 5'ss of exon 7
TATTTAGATCGACCTGGAGTTTGCTTTTGTTCTCGAACAACTTATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAGgttgtttattatctttttttgtagtggtgttaaagtaattcatatctaaatacaggagctgacttgagctaaaattttgtccag
 |  | ||||     ||  || | ||||| | ||||||||||||||| || |||||||| |||||||| || ||||| | | |||   | ||||   ||   |||| | ||  ||  | || ||   ||    | |  ||  ||    |  |    ||   |   |      ||||
CACCTTGATCAGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATGATGATAATGCTATTACAAATGCGGTTGAGATATTTAATACCTCTAGgtaacttcccatctgtgttactaaagatgctaccttaccatacacatatttattctaatt---ctgtttttgcaccc---ccag

upper sequence: Vv00s1206g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G109039_T04 (Zea mays), 5'ss of exon 1
--------TATTTAGATCGACCTGGAGTTTGCTTTTGTTCTCGAACAACTTATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAGgttgtttattatctttttttgtagtggtgttaaagtaattcatatctaaatacaggagctgacttgagctaaaattttgtccag
         |  | ||||     ||  || | ||||| | ||||||||||||||| || |||||||| |||||||| || ||||| | | |||   | ||||   ||   |||| | ||  ||  | || ||   ||    | |  ||  ||    |  |    ||   |   |      ||||
AAATGCAGCACCTTGATCAGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATGATGATAATGCTATTACAAATGCGGTTGAGATATTTAATACCTCTAGgtaacttcccatctgtgttactaaagatgctaccttaccatacacatatttattctaatt---ctgtttttgcaccc---ccag

upper sequence: Vv00s1206g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G00740.3 (Glycine max), 5'ss of exon 7
TATTTAGATCGACCTGGAGTTTGCTTTTGTTCTCGAACAACTTATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAGgt--tgtttatta--tctttttttgtagtggtgttaaagtaattcatatctaaa-tacaggagctgacttga-gcta--aaattttgtccag-----------------------------------------
||  ||||||||||||| ||| ||||||||||| |||| |||||||| |||||||| || |||||||| || ||||||||||||  ||| ||||  || || ||   |||  | || |  || | ||      ||| || |   |  |  || |  | |  ||  | ||  || |  ||   |                                          
TACGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAGgtcttgcttctttgctctcctatttttctgttattttctctatttatttaggatctttagcaattcatatggtgttagcaactactgcttacacatctcaaggtggcatactaacaattaattgatattccag

upper sequence: Vv00s1206g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G40060.1 (Glycine max), 5'ss of exon 7
TATTTAGATCGACCTGGAGTTTGCTTTTGTTCTCGAACAACTTATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAGgt--tgtttattatctttttttgtagtggtgttaaagtaattcatatctaaa---tacaggagctgacttga-gcta--aaattttgtccag-----------------------------------------
||| ||||||||||||| ||| ||||||||||| |||| |||||||| |||||||| || |||||||| || ||||||||||||  ||| ||||  || || ||  || |  |  |  |  | |        ||  ||| ||     |  ||    | || ||  | ||  || |  ||   |                                          
TATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAGgtcttgcttctttgctctcctatttttcttttattttctctttttatttaggatctttagtgattcacatggtgttagcaactactgcttacaactctcaaggtggcatactgacaattaattgatattccag

upper sequence: Vv00s1206g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G02070.1 (Glycine max), 5'ss of exon 7
TATTTAGATCGACCTGGAGTTTGCTTTTGTTCTCGAACAACTTATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAGgt----tgtttattatctttttttgtagtggtgttaaagtaattcatat--ctaaatacaggagctgacttgagctaaaattttgtccag-------------------------------------------
|| |||||||| || || ||| | |||||| | ||||| || ||||| |||||||| ||||||||||| || |||||||||||    || ||||    | | | || | | || || |  |  |  || | |  ||  |||  ||||||    ||  |||  | ||| |  | | ||  ||                                            
TACTTAGATCGGCCAGGGGTTAGTTTTTGTACCCGAACTACATATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtattttttctcttctttcttattatccttttcctagatttttttttattcctaaattgttgatatgatgttagcaatcactgtgcacaaccctcaaatagggcttgttactaactgttgattaatcaatcag

upper sequence: Vv00s1206g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G12980.2 (Glycine max), 5'ss of exon 7
TATTTAGATCGACCTGGAGTTTGCTTTTGTTCTCGAACAACTTATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAGgttgtttattatctttttttgtagtggtgttaaagtaattcatatctaaatacaggagctgacttgagctaaaattttgtccag-------------------------------------------
|| |||||  | || || ||| | |||||| | ||||| || ||||| |||||||| ||||||||||| || |||||||||||    || ||||  ||  || | || |||  || |    ||    |   |  | |     | || |   |   |||||| |  | | ||  ||                                            
TACTTAGACAGGCCAGGGGTTAGTTTTTGTACCCGAACTACGTATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtccttc-ttcttttctttcttattatccttttccttgatttttttggtttgcaag---ttgtttgagcaatcactgtgctcaaccctcaaatagggcttcttactaatgattgataaatctatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33409772|gb|CF215399.1|CF215399
EST:     TATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAG                         TGGGGCCACTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGGGACTT
genomic: TATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAGgttgtttatt ... ttttgtccagTGGGGCCACTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGGGACTT
EST: gi|349827954|gb|FQ422822.1|FQ422822
EST:     CAAATGCAGTAGAGATTTATGATAGTCCCAG                         TGGGGCCACTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGGGACTT
genomic: CAAATGCAGTAGAGATTTATGATAGTCCCAGgttgtttatt ... ttttgtccagTGGGGCCACTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGGGACTT
EST: gi|294964449|gb|GW838252.1|GW838252
EST:     TATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAG                         TGGGGCCACTCATTTCATGGCTTCAAATAATGACTATGGAGTTAGGGACTT
genomic: TATGACGACAATGCTATCACAAATGCAGTAGAGATTTATGATAGTCCCAGgttgtttatt ... ttttgtccagTGGGGCCACTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGGGACTT