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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTCCTCACTGCTGGGGCAACGTCCGCCAACGAGACACTCATGTTCTGCCTTGCTAACCCAGGCGAAGCTTTTCTCCTTCCCACCCCATACTACCCAGGgtaattaccttgctatttctgtttgcaactgctataaagcctttaagttgtttattgctttacgcatgaaatgtagttaactgacttttttttttgcgattcttgcag

Basic information

species Vitis vinifera
transcript Vv00s0840g00010.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0840g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g51740.1 (Oryza sativa), 5'ss of exon 3
TAGTCCTCACTGCTGGGGCAACGTCCGCCAACGAGACACTCATGTTCTGCCTTGCTAACCCAGGCGAAGCTTTTCTCCTTCCCACCCCATACTACCCAGGgtaattaccttgctatttctgtttgcaactgctataaagcctttaagttgtttattgctttacgcatgaaatgtagttaactgacttttttttttgcgattcttgcag
| || ||||| || || || || || || |||||| | |||||||||||||| ||  |||  ||||| || || ||| | |||||||||||||||||||||||   ||  ||  | | | | |     |||||| |   |||||      |      |     |||||    |    |  || ||  |   |     | |   |||||
TCGTGCTCACCGCCGGCGCCACCTCGGCTAACGAGGCGCTCATGTTCTGCCTCGCCGACCACGGCGACGCCTTCCTCATCCCCACCCCATACTACCCAGGgtacgcac--tggcactgccgct----gctgctaca---cctttttaccatacgcgacaacgtgcatggtg-gcgcatggctaacggtggatggatgggtggatgcag

upper sequence: Vv00s0840g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G054361_T01 (Zea mays), 5'ss of exon 2
TAGTCCTCACTGCTGGGGCAACGTCCGCCAACGAGACACTCATGTTCTGCCTTGCTAACCCAGGCGAAGCTTTTCTCCTTCCCACCCCATACTACCCAGGgtaattacct-tgctat-ttctgtttgca-actgctataaagcctttaagttgtttattgctttacgcatgaaatgtagttaactgacttttttttttgcgattcttgcag
| || ||||| || || || || || ||||||||| | |||||||||||||| ||  |||  || || || |||||| | ||||| |||||||||||||||||  |   | || |   || |  || |     ||   ||   |||  ||| |   |  |    |     |    |  |    |||  | |         |          
TCGTGCTCACCGCCGGAGCCACCTCGGCCAACGAGGCCCTCATGTTCTGCCTCGCCGACCACGGAGACGCCTTTCTCATCCCCACGCCATACTACCCAGGgtatgtgtgtgtgttgccttgtacttactcgtcgccgcaagtacttgcagtagggaac-gtgcaagtggcggcggggcggcgtctgggtgtcgccgcgatg----------