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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCTGTTGGCAGAAGCAGGTGACACATTATTTGCTTCCTTTATTGGAACAAAGCAGTATAAgtaagatggatgacctgctgttcatctatttaagtgtttatctctttaaaaattataacatttctcttttctattattctgggtgtctattactccctaacatgaattttctttttgtatttttcag

Basic information

species Vitis vinifera
transcript Vv00s0630g00010.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0630g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G148913_T01 (Zea mays), 5'ss of exon 3
GTATCTGTTGGCAGAAGCAGGTGACACATTATTTGCTTCCTTTATTGGAACAAAGCAGTATAAgtaagatggatgacctgctgttcatctatttaagtgtttatctctttaaaaattataacatttctcttttctattattctgggtgtctattactccctaacatgaattttctttttgtatttttcag
||||||||| ||||| || ||||||||  |||||||| | |||||||| ||||||||||| ||||||||  | |     |   ||||     | || |||  ||    ||   | | |||  ||| |     || | |||||          ||  | ||| | |                         
GTATCTGTTAGCAGAGGCTGGTGACACCCTATTTGCTACATTTATTGGCACAAAGCAGTACAAgtaaga--gtttgatggaacttcagactctcaaatgtccattatgtttgcagtaatacaattgca----tcaactattc---------gttttttcctcatacag----------------------

upper sequence: Vv00s0630g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G09740.1 (Glycine max), 5'ss of exon 3
GTATCTGTTGGCAGAAGCAGGTGACACATTATTTGCTTCCTTTATTGGAACAAAGCAGTATAAgtaagatggatgacctgctgttcatctatttaagtgtttatc-tctttaaaaattataacatttctcttttctattattctgggtgtctattactccctaacatgaattttctttttgtatttttcag
|||| |||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| |||| || |   |   |   || || | | | ||||  ||||   || ||  || ||| |  || | | |||  | ||||| |   | | |     | || ||                           
GTATTTGTTGGCAGAGGCAGGAGACACTTTATTTGCCTCCTTTATTGGAACAAAGCAGTACAAgtgagtt---ttttcgtatgatcctttgtgtaagcctttaaaatcattgcaacttaaagaatctttatttctttttattttttattttt----ttgccgaaag-------------------------