Sequence
atgc intronic sequence ATGC exonic sequenceGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGGgtaggtgtctttgagtaaatcatacaatgattggaatcctgaccttgttgttttgttttgttcttcaataagtcctcgctacagcatgctttccaaactc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0611g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S79_75V6.1 (Physcomitrella patens), 5'ss of exon 13
GATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGGgtaggtgtctttgagtaaatcatacaatgattggaatcctgaccttgttgttttgttttgttcttcaataa--gtcctcgctacagcatgctttccaaactc
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GATCCAGCTGTTACAGACGTTGCTATAGCTGCACTTAATGGATTGAAAATGGGTGACAAGACTTTAAGCGTGCGTCGTGCTTCTGCTAGgtgcggagttaattgaaattctcaccctgtctgtctggctgtgtgtctcgctccctctctttttacaggacctgtcagttttgaatattgcctgtggaaa--
upper sequence: Vv00s0611g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S58_254V6.1 (Physcomitrella patens), 5'ss of exon 14
GATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGGgtag---gtgtctttgagtaaatcatacaatgattggaatcctgaccttgttgttttgttttgttc--ttcaataagtcctcgctacagcatgctttccaaactc
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GATCCAGCTGTTACAGATGTTGCTATTGCTGCACTTAATGGGTTGAAAATGGGTGACAAGACTTTAAGCGTGCGTCGTGCTTCTGCCAGgtagcgaattttttttaatctttctcaccctatccgtctgtatggctgtgt-gcctcgttcccttccctttcacaggacccatcagttgtggatattgcct----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37189838|gb|CF609187.1|CF609187EST: GGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGG CAGTGGACAAGCAAAATCAGAGCAGGATAATATATTAGCTCAGGCACAACA
genomic: GGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGGgtaggtgtct ... aattttacagCAGTGGACAAGCAAAATCAGAGCAGGATAATATATTAGCTCAGGCACAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGGgtaggtgtctttgagtaaatcatacaatgattggaatcctgaccttgttgttttgttttgttcttcaataagtcctcgctacagcatgctttccaaactc
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