Sequence
atgc intronic sequence ATGC exonic sequenceAGAAACTGGAGCTCTATGTGCAATGAAAGAAGTTGAATTGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAGgttatcctccagctattgctatactttcctaatcaacttagttatatttcatgattttgcaagttaaacattggactcaatccatttaaagaaatttttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os07g02780.1 (Oryza sativa), 5'ss of exon 3
AGAAACTGGAGCTCTATGTGCAATGAAAGAAGTTGAATTGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAGgtta--tcctccagctattgctatactttcctaat--caacttagttatatttcatgattttgcaagttaaacattggactcaatccatttaaagaaatttttt
||||||||||||| ||||||||||||||||| | | |||||||||| | |||||||| ||| | | ||||||||||||||||||| | | | || || | | || | | || | | | | || || || || | || || | | | || |||| ||| |
GCAAACTGGAGCTCTTTGTGCAATGAAAGAAGTCAACATAATTCCTGATGATGCGAAATCTGCCGAGTCTTTGAAGCAGTTAGAGCAGgttaattgactgtgtcctaaataagattacatgatgtccatttggggcaacataaaaatcttcca--tttatcactgccattagtttatctaaatgtattgt--
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G10050.1 (Glycine max), 5'ss of exon 2
AGAAACTGGAGCTCTATGTGCAATGAAAGAAGTTGAATTGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAGgttatcctccagctattgctatactttcctaatcaacttagttatatttcatgattttgcaagttaaacattggactcaat-ccatttaaagaaatttttt
||||| ||||| ||||||||||||| ||||| || || |||||||||| ||||||||||||||| ||||||||||||||||||||||| | || | | | | ||| | || | | | ||| | ||| | | | | | ||| | || ||
GGAAACCGGAGCATTATGTGCAATGAAGGAAGTAGAGTTATTTCCTGATGATCCAAAATCTGCAGAGTGTATAAAGCAGTTAGAGCAGgttggttgtccattacttgctttttaccactatctaattggcagctgtgtaagatgt-acaaactgtgtagagtgttgtgtgtcatgtgttttttttgtta
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G20460.1 (Glycine max), 5'ss of exon 4
AGAAACTGGAGCTCTATGTGCAATGAAAGAAGTTGAATTGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAGgttatcctccagctattgctatactttcctaatcaacttagttatatttcatgattttgcaagttaaacattggactcaatccatttaaagaaatttttt
||||| ||||| ||||||||||||| ||||| ||||| |||||||||| ||||||||||| ||| ||||||||||||||||||||||| | ||| | | | | || | || | | | ||||| || || | ||| | | || | |
GGAAACCGGAGCATTATGTGCAATGAAGGAAGTAGAATTATTTCCTGATGATCCAAAATCTGCTGAGTGTATAAAGCAGTTAGAGCAGgttggttgtccactacttgctttttgccactgtctatttggcaactgcgtagagttttgtgtgtcttgtttttttgtgttgttattacagtacatatcat
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G39070.1 (Glycine max), 5'ss of exon 5
AGAAACTGGAGCTCTATGTGCAATGAAAGAAGTTGAATTGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAGgttatcc-tccagctattgctatactttcctaatcaacttagttatatttcatgattttgcaagttaaacattggactcaatccatttaaagaaatttttt-----
| |||||||||| | ||||||||||| |||| ||| | || ||||||| ||||| ||||||||| | ||||||||||||||||||||||| | || || | ||||| | | || || | |||| | || | | |||| || | | | | | || | ||||
AAAAACTGGAGCATTGTGTGCAATGAAGGAAGCAGAAATATTTTCTGATGATCCAAAGTCTGCAGAGTGCATAAAGCAGTTAGAGCAGgttattcatctcattagt-taatactcccttcatt--ctagatgatatgacctg---taagagaataaaaataaaaattattttaaaataattgttattttataaa
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G06200.1 (Glycine max), 5'ss of exon 6
AGAAACTGGAGCTCTATGTGCAATGAAAGAAGTTGAATTGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAGgttatcctcc-----agctattgc----tatac-----tttcctaatcaacttagttatatttcatgattt------tgcaagttaaac---attggactcaatccattta-aagaaatttttt----------------------------------------------------------------------------
| |||||||||| | ||||||||||| |||| ||| | || ||||||| ||||| ||||||||| | ||||||||||||||||||||||| | | || || || ||||| ||| | || |||| || | || | | || || | || || | | |||| | || | ||| | ||||
AAAAACTGGAGCATTGTGTGCAATGAAGGAAGCGGAAATATTTTCTGATGATCCAAAGTCTGCAGAGTGCATAAAGCAGTTAGAGCAGgttattcatctcaatagttaatggagtatatacaactgtttatttattaactgtgtaaaatacactaacttccatgttgtatttttaattaagattgtctcaccttagctatatgaagtgttttatttacccaaaattatttcctttctataattcactttatacatcctcattaccaatttctacctttttttttccag
upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G66850.1 (Arabidopsis thaliana), 5'ss of exon 3
AGAAACTGGAGCTCTATGTGCAATGAAAGAAGTTGAATTGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAGgttatcctccagctattgctatactttcctaatcaacttagttatatttcatgatt--ttgcaagttaaacattggactcaatccatttaaagaaatttttt---
||||||||||| | ||||| |||||||||||||| | ||||||||||||| ||||| |||||| |||||||||| ||||||||||| | ||||||| | || | ||| | | || ||| | | || || ||| ||| || || | | || | | || |||
CGAAACTGGAGCATTGTGTGCGATGAAAGAAGTTGAGCTATTTCCTGATGACCCCAAATCCGCAGAGTGTATAAAGCAATTAGAGCAGgtaa-cctccaggagagacaat--tctcccagtgctctcagtcacggct-gtgtttggttgttcgtttgttatatatcttatagctttctatttatttatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110689010|gb|EE067915.1|EE067915EST: TGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAG GAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTT
genomic: TGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAGgttatcctcc ... attcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAAACTGGAGCTCTATGTGCAATGAAAGAAGTTGAATTGCTTCCTGATGACCCAAAATCTGCAGAGAGTATAAAGCAGTTAGAGCAGgttatcctccagctattgctatactttcctaatcaacttagttatatttcatgattttgcaagttaaacattggactcaatccatttaaagaaatttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa