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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGGCAAGCTCCGGCAAGACAGGCGGCGTTGGGTGCGGGCATACCGAATTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAGgtagattctattatctgtgggaaactataaatttgagttgtcaattatcatatgtggacaatattatcaaagtgtatgacttgtcctttttgtcttcttgatccag

Basic information

species Vitis vinifera
transcript Vv00s0531g00050.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0531g00050.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G866758_T02 (Zea mays), 5'ss of exon 4
TTGGGGCAAGCTCCGGCAAGACAGGCGGCGTTGGGTGCGGGCATACCGAATTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAGgta-gattcta--ttatctgtgggaaactataaatttgagttgtcaattatcatatgtggacaatattatcaaagtgtatgacttgtcctttttgtcttcttgatccag
|||||||||||||| ||||| || || ||  ||||||| || ||||| || || || || ||||||||| |||||||||||||||| || || |||||||||  || || |  ||||||||  |    | |  | |    |  |||    ||| |   |    | |||| |  |   |      | |  ||||  | | ||  || |||
TTGGGGCAAGCTCCTGCAAGGCAAGCTGCTCTGGGTGCCGGGATACCAAACTCTGTTGTTTGCACCACTGTTAACAAAGTCTGTGCATCTGGCATGAAAGgtttgaatcgaatttatctgtctgtccttgtgtactc---tgctcagagttcacagaagtgagagattacctgaccatgc----tcttgttttcctttcctatatgcag

upper sequence: Vv00s0531g00050.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G39870.1 (Glycine max), 5'ss of exon 4
TTGGGGCAAGCTCCGGCAAGACAGGCGGCGTTGGGTGCGGGCATACCGAATTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAGgta----gattctattatctgtgggaaactataaatttgagttgtcaattatcatatgtggacaatattatcaaagtgtatgacttgtcctttttgtcttcttgatccag
|| ||||| ||||| || |||||||| || || ||||| || || || |  || ||  | ||||| ||||||||||| |||||||| ||||||||||||||||    | || | || |   |  | ||   ||        ||  || |||  |||| || |   || | |  ||| ||    |||||| ||   |              
TTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgctgtttttcttgttgatttggaagggtattccactattcccacttaa-atatatgaattttaat-tggaagggtc---cttgtcattgcag--------------

upper sequence: Vv00s0531g00050.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G00910.1 (Glycine max), 5'ss of exon 4
TTGGGGCAAGCTCCGGCAAGACAGGCGGCGTTGGGTGCGGGCATACCGAATTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAGgtagattctattatctgtgggaaactataaatttgagttgtcaattatcatatgtggacaatatta--tcaaagtgtatgacttgtcctttttgtcttcttgatccag
|| ||||| ||||| || |||||||| || || ||||| || || || |  || ||  | ||||| ||||||||||| |||||||| ||||||||||||||||  |||| || | ||| |      ||      | ||  || | |||      |  |  |||| |  |  || || | |  |  |  |  |||              
TTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgttctttt-tttgttgttgttgatttggaagggtattccagtattcccacttaaatatatgaattttaattggaagggtccttttcattgcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37185119|gb|CF604472.1|CF604472
EST:     TTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAG                         CTATAATGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTG
genomic: TTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAGgtagattcta ... cttgatccagCTATAATGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTG
EST: gi|77584049|gb|DV221063.1|DV221063
EST:     TTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAG                         CTATAATGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTG
genomic: TTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAGgtagattcta ... cttgatccagCTATAATGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTG
EST: gi|77586184|gb|DV222186.1|DV222186
EST:     TTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAG                         CTATAATGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTG
genomic: TTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAGgtagattcta ... cttgatccagCTATAATGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTG
EST: gi|71877133|gb|DT026188.1|DT026188
EST:     TTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAG                         CTATAATGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTG
genomic: TTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAGgtagattcta ... cttgatccagCTATAATGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTG
EST: gi|37186247|gb|CF605600.1|CF605600
EST:     TTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAG                         CTATAATGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTG
genomic: TTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAGgtagattcta ... cttgatccagCTATAATGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTG