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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGGCTATTGCAGATTCCAAACGACAAGGATTTCTTGGTTTCAGGGAGTTCATCACTGCAATGCAGgttcctcctttcaacattcattcttgtatttatatcaactaatttgtaagaactcgatatttatttattttggtaatgaacag

Basic information

species Vitis vinifera
transcript Vv00s0516g00020.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G065012_T03 (Zea mays), 5'ss of exon 3
GTTTGGGCTATTGCAGATTCCAAACGACAAGGATTTCTTGGTTTCAGGGAGTTCATCACTGCAATGCAGgttcctcctttcaacattcatt---cttgtatttatatcaa---ctaatttgtaa---gaactcgatatttat---ttattttggtaatgaacag---------------
|||||||| || || ||||||||||| ||||||| |||||| |||   |||||||| ||||| |||||||||  | |  |  ||||| ||     |  | || |     |   |     |  ||   | |||   | ||| |    |||||    | | ||| |               
GTTTGGGCGATCGCTGATTCCAAACGCCAAGGATATCTTGGATTCTACGAGTTCATGACTGCCATGCAGgtttgtacagtatacattgatcaggttcttcttcagtctgatctccggcctacaacatggactttttttttctcttctatttgtacattaaaccggatagcaatgtgcag