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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTCTTTAATATTAACAAAGGGAAGGCAGTCATTGTCTCCCTTTCTCCCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAGgtgcaactattgcaatttatatttcttgtaaattttggatttttagtgacaaaaacatttctagcatcattgtacatgtgattacaatgcaagtattcttccaatttcag

Basic information

species Vitis vinifera
transcript Vv00s0508g00020.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0508g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G01120.1 (Glycine max), 5'ss of exon 3
GTTTCTCTTTAATATTAACAAAGGGAAGGCAGTCATTGTCTCCCTTTCTCCCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAGgtgcaactattgcaatttatatttcttgtaaattttggatttttagtgacaaaaacatttctagcatcattgtacatgtgattacaatgcaagtattcttccaatttcag
||||||    ||||||||   ||| ||||| || ||||| || |||||||||||||||||||||||  ||||| ||||||||||| | |||||| | ||||||  ||| || ||  ||   || || || |  |||     ||| | |   || |  ||| | | | |  |  |      | || |||  || |       ||||     
GTTTCTGAACAATATTAATTCAGGAAAGGCCGTGATTGTGTCTCTTTCTCCCCAGTCAAGGGCTTCTATTGCTTTTCATTTTGGCATTTCTCCAATTCAGgtgacact-ttacatgttgctttgctcgttatattt-----tttggggttgaatatgtttttggtacctctaaaatgaaaaataaaataaaattgagagggcaatc----

upper sequence: Vv00s0508g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G39690.1 (Glycine max), 5'ss of exon 3
GTTTCTCTTTAATATTAACAAAGGGAAGGCAGTCATTGTCTCCCTTTCTCCCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAGgtgcaactattgcaatttatatttcttgtaaattttggatttttagtgacaaaaacatttctagcatcattgtacatgtgattacaatg-caagtattcttccaatttcag
||||||    ||||||||   ||| ||||| || ||||| || |||||||||||||||||||||||  ||||| ||||||||||| | |||||| | ||||||  ||| ||  |  ||   || ||  | |       |||||| | |  ||| |  ||| |    |   |     |   || | ||    ||  |||             
GTTTCTGAACAATATTAATTCAGGAAAGGCCGTGATTGTGTCTCTTTCTCCCCAGTCAAGGGCTTCTATTGCTGTTCATTTTGGCATTTCTCCAATTCAGgtgacact-ttagatgttgctttgctcattat-----aattttttgggttaaatatgtttttgtttttggtacctctaaaatgaaaaaaataaaaattgagagggc-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56409366|gb|CX017618.1|CX017618
EST:     CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAG                         GTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
genomic: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAGgtgcaactat ... ccaatttcagGTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
EST: gi|110699299|gb|EE076186.1|EE076186
EST:     CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAG                         GTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
genomic: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAGgtgcaactat ... ccaatttcagGTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
EST: gi|56409134|gb|CX017386.1|CX017386
EST:     CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAG                         GTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
genomic: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAGgtgcaactat ... ccaatttcagGTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
EST: gi|56409463|gb|CX017715.1|CX017715
EST:     CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAG                         GTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
genomic: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAGgtgcaactat ... ccaatttcagGTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA