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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGGCGGAATTGCACAAACTAGATAAAGACGGCATTTATGCCGTTATCAACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAGgtacacaggcttgctatttgtctttaaagtaataaccttttttcctttttctcttgataatcttataattttgtgtatcagcattttatacaattagtaa...

Basic information

species Vitis vinifera
transcript Vv00s0487g00030.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349832967|gb|FQ416345.1|FQ416345
EST:     AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAG                         GAATGATGCAAATGAGATTGGTTGGTGCTACAAGGATGCCTTTGTCATGCA
genomic: AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAGgtacacaggc ... ggttgtccagGAATGATGCAAATGAGATTGGTTGGTGCTACAAGGATGCCTTTGTCATGCA
EST: gi|351013858|gb|FQ434010.1|FQ434010
EST:     AACCTTCAGAATCTCCGCTCTCAAAATCTGCTTAATCTTGTGGTCACAAG                         GAATGATGCAAATGAAATTGGTTGGTGCTACA-GGATGC
genomic: AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAGgtacacaggc ... ggttgtccagGAATGATGCAAATGAGATTGGTTGGTGCTACAAGGATGC
EST: gi|351014158|gb|FQ434747.1|FQ434747
EST:     AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAG                         GAATGATGCCAATGAGATTGGTTGGTGCTACAAGGATGCCTT
genomic: AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAGgtacacaggc ... ggttgtccagGAATGATGCAAATGAGATTGGTTGGTGCTACAAGGATGCCTT
EST: gi|351014892|gb|FQ438092.1|FQ438092
EST:     AACCTTCAGAATCTCTGCTCTCAAAATCTGCTTAATCTTGTGGTCACAAG                         GAATGATGCAAATGAGATT
genomic: AACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAGgtacacaggc ... ggttgtccagGAATGATGCAAATGAGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGGGCGGAATTGCACAAACTAGATAAAGACGGCATTTATGCCGTTATCAACCTTCAGAATCTCTGCTCTCAGAATCTGCTTAATCTTGTGGTCACAAGgtacacaggcttgctatttgtctttaaagtaataaccttttttcctttttctcttgataatcttataattttgtgtatcagcattttatacaattagtaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagtaa