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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTATAGCTACTTGAACATATCCATCAGCAAAAACATAGTGCCAGATGGAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaagaagttatcctctctttatttccccagggtcaatctgagaagattatcttcaataatgtgttatggtaagagctatttcaatttcaataggg...

Basic information

species Vitis vinifera
transcript Vv00s0404g00020.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0404g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G025242_T02 (Zea mays), 5'ss of exon 3
ATTGTATAGCTACTTGAACATATCCATCAGCAAAAACATAGTGCCAGATGGAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaagaagttatcctctcttta------tttccccagggtcaatctgagaagatta--tcttcaataatgtgttatggtaagagctatttcaatttcaataggg
  |||| ||||||||||| ||||| |||||||| |||||||| || |||| ||| |||||||| |   |||| || || |||||  |  | ||||||| |||          || ||||   |  |       ||    |   |  |  |   | ||||   |||| | |  || | | |||   | |||||    | ||        
GATGTACAGCTACTTGAATATATCTATCAGCAAGAACATAGTCCCTGATGAAATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCTCTTTTCCTGgtacctttct--ttttccttggtagagagaaccttttttatttttgaatttctatgattgcttcttaagttttgcgatgtggcctgtgctatggtgagttat------

upper sequence: Vv00s0404g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G31920.1 (Glycine max), 5'ss of exon 2
ATTGTATAGCTACTTGAACATATCCATCAGCAAAAACATAGTGCCAGATGGAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaagaagttatcctctctttatttccccagggtcaatctgagaagattatcttcaataatgtgttatggt-aagagctatttcaatttcaataggg-------------------------------------------------
  ||||||| ||| | ||||||||||| || | |||||| |||||||||| ||| ||||| || |||||||||||||| || |||||||||||||| |||||  |          ||  |  | |     |   | ||    || | |   |   |   |  ||| || | |  | |  ||  ||||  |  |  ||| |                                                  
GATGTATAGTTACCTTAACATATCCATTAGTAGAAACATTGTGCCAGATGAAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg---cttctgcagtctgcacactttgagttgtgctaaaattttgggcagaatgaatttgatctactcacaagaaatttgcagatgtatatgatgttggtgatgtcataatattcacaattttgtaaattgatcttctgcag

upper sequence: Vv00s0404g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G07390.1 (Glycine max), 5'ss of exon 2
ATTGTATAGCTACTTGAACATATCCATCAGCAAAAACATAGTGCCAGATGGAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaagaagttatcctctctttatttccccagggtcaatctgagaagattatcttcaataatgtgttatggtaa-gagctatttcaatttcaataggg-------------------------------------------------
  ||||||| ||| ||||||||||||| || | |||||| ||||| |||| ||||||||| || |||||||||||||| || ||||||||||| || |||||  |          ||  |  | |     |  ||  |    || | |   |       |  ||| || | |  |||  ||  ||||  || |  ||| |                                                  
GATGTATAGTTACCTGAACATATCCATTAGTAGAAACATTGTGCCCGATGAAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctg---cttctgcagtctgcacacttagaattgtactaaaattttggggagaatgaatttgatctactaacaagaaatttgcatatgtatatgatgtttgtgatgtcatggtattcacaattttgtaaatcgatcttctgcag

upper sequence: Vv00s0404g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G21570.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTGTATAGCTACTTGAACATATCCATCAGCAAAAACATAGTGCCAGATGGAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaagaagttatcctctctttatttc-cccagggtcaatctgagaagattatcttcaataatgtgttatggtaagagctatttcaatttcaataggg
  ||||||| ||  | |||||||| || |||||||||||  |||| |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |||||  |     |  | || |  | | |||||  | |   || || ||      ||| | | || |  |  || ||   |  | | |  ||            
GATGTATAGTTATCTAAACATATCTATGAGCAAAAACATTTTGCCTGATGGAATCAAAGGAAGAGAGATTCACCATTCTTTCCCAATGACTCTTTTTCAGgttcgtctctatct-tcattgcatgatttcatctaatatctatttgcttct-ttacccttaaaa--gctttgtgtctattgttttgacag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32269051|gb|CD718210.1|CD718210
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATACTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|351012256|gb|FQ429941.1|FQ429941
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|351025607|gb|FQ426621.1|FQ426621
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|351034965|gb|FQ458322.1|FQ458322
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|110427829|gb|EC994282.1|EC994282
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|349812276|gb|FQ406297.1|FQ406297
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|351028376|gb|FQ427272.1|FQ427272
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|30323971|gb|CD007233.1|CD007233
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATACTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|110731025|gb|EE108773.1|EE108773
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATACTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|46918092|gb|CN547421.1|CN547421
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|349808168|gb|FQ403355.1|FQ403355
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|30324440|gb|CD007702.1|CD007702
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATACTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|352795533|gb|FQ480121.1|FQ480121
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|352798830|gb|FQ478465.1|FQ478465
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCCTACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|351041869|gb|FQ456079.1|FQ456079
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|46918093|gb|CN547422.1|CN547422
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|349816879|gb|FQ405005.1|FQ405005
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|161716818|gb|FC069179.1|FC069179
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|349809320|gb|FQ401088.1|FQ401088
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|110720058|gb|EE097300.1|EE097300
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|161721740|gb|FC070480.1|FC070480
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|30325099|gb|CD008361.1|CD008361
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACA
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACA
EST: gi|110377794|gb|EC942882.1|EC942882
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|71856361|gb|DT005416.1|DT005416
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|349824711|gb|FQ414569.1|FQ414569
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|351030194|gb|FQ432132.1|FQ432132
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|351048889|gb|FQ449732.1|FQ449732
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|110380126|gb|EC945370.1|EC945370
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATACTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|161718894|gb|FC067003.1|FC067003
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|110391488|gb|EC956466.1|EC956466
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATACTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|351039382|gb|FQ461249.1|FQ461249
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|33404104|gb|CF209731.1|CF209731
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|351056238|gb|FQ453700.1|FQ453700
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|30125760|gb|CB911099.1|CB911099
EST:     GAATTANAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|351036835|gb|FQ459357.1|FQ459357
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|352786896|gb|FQ481271.1|FQ481271
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTTAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|349822353|gb|FQ412617.1|FQ412617
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|71856971|gb|DT006026.1|DT006026
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATACTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|349810765|gb|FQ403008.1|FQ403008
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|161716406|gb|FC068410.1|FC068410
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATACTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
EST: gi|110381469|gb|EC934548.1|EC934548
EST:     GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAG                         CCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG
genomic: GAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaaga ... aaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGTATAGCTACTTGAACATATCCATCAGCAAAAACATAGTGCCAGATGGAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaagaagttatcctctctttatttccccagggtcaatctgagaagattatcttcaataatgtgttatggtaagagctatttcaatttcaataggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaga