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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTCTGCTCACATGCTATGGGTTGGCGAGCGTACCCGCCAACTGGATGGTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatctgcactgcaaactttcttatccttttgattaatgaagctactattacttaaagaatgagtgtagtgtagacctatttttattcaccatctt...

Basic information

species Vitis vinifera
transcript Vv00s0391g00070.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27587008|gb|CB009703.1|CB009703
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110384275|gb|EC948702.1|EC948702
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110693008|gb|EE068861.1|EE068861
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|27581082|gb|CB003777.1|CB003777
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|18458715|gb|BM436993.1|BM436993
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|71871506|gb|DT020561.1|DT020561
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|37187911|gb|CF607262.1|CF607262
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110700612|gb|EE077417.1|EE077417
EST:     CTCATGTAGAATTCCCAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: CTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|37186516|gb|CF605869.1|CF605869
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110688800|gb|EE067768.1|EE067768
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|161710599|gb|FC058150.1|FC058150
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|352781580|gb|FQ468878.1|FQ468878
EST:     GAGTTGCTAATCCCCTGGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110392481|gb|EC957933.1|EC957933
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110363501|gb|EC927095.1|EC927095
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110364235|gb|EC923637.1|EC923637
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110361287|gb|EC924751.1|EC924751
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|33409913|gb|CF215540.1|CF215540
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110361608|gb|EC925094.1|EC925094
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110363031|gb|EC926597.1|EC926597
EST:     AAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: AAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|27585588|gb|CB008283.1|CB008283
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110687271|gb|EE064536.1|EE064536
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|71869549|gb|DT018604.1|DT018604
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|71875482|gb|DT024537.1|DT024537
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|30256393|gb|CB972236.1|CB972236
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110712271|gb|EE089704.1|EE089704
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|161721625|gb|FC070835.1|FC070835
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAA
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAA
EST: gi|110703030|gb|EE079517.1|EE079517
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAA                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110427584|gb|EC994031.1|EC994031
EST:     GTGCTCATGTAGAATTCTTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110373125|gb|EC937337.1|EC937337
EST:     GTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110363856|gb|EC927479.1|EC927479
EST:     CCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: CCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110390172|gb|EC955066.1|EC955066
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110692039|gb|EE070829.1|EE070829
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|110419170|gb|EC985377.1|EC985377
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
EST: gi|156738155|gb|EV242276.1|EV242276
EST:     GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAG                         GTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG
genomic: GTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatct ... tgttgtgcagGTGAGCAATAAAATGGATCCAAATGAGCTAGTCAAACTCGTTGAAATCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGCTCTGCTCACATGCTATGGGTTGGCGAGCGTACCCGCCAACTGGATGGTGCTCATGTAGAATTCCTAAGAGGAGTTGCTAATCCCCTTGGCATCAAGgtttccatctgcactgcaaactttcttatccttttgattaatgaagctactattacttaaagaatgagtgtagtgtagacctatttttattcaccatctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaat