Sequence
atgc intronic sequence ATGC exonic sequenceTGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATGgtaactgctgagtccacttttaacaagctgtggaaaatattctatatcatattatttatatgacaatttcactttattag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G41600.1 (Glycine max), 5'ss of exon 5
TGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATGgtaactgctgagtccacttttaacaagctgtggaaa-atattctatatcatattatttatatgacaatttcactttattag-
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TGGTGGCCCGGTGGATTGGGTAAAATATCCACCCATGCTGTTGTTTATGCCCGTCTAATTATTGGTGGTGAAGACCATGGAGTGCATGgtaattgccaaatttagtcatctaagtttctggtgttagattcagaggcaagttaacta----attatttgcctatttgaag
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G03800.1 (Glycine max), 5'ss of exon 5
TGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATGgtaactgctgagtccacttttaacaagctgtgg-aaaatattctatatcatattatttatatgacaatttcactttattag
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TGGTGGCCTGGTGGATTGGGTAAAATATCCACCCATGCTGTTGCTTATGCCCGTCTAATTATTGGTGGTGAAGACCATGGAGTGCATGgtaattgccaaatttagtcatcgaagtttctggtgttagattcagaggcaaattaacta-attatttgtacaatttgaag-
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G04940.1 (Glycine max), 5'ss of exon 5
TGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATGgtaactgctgagtccacttttaacaagctgtgg-aaaatattctatatcatattatttatatgacaatttcactttattag
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TGGTGGCCTGGTGGATTGGGTAAAGTGTCAACACATGCCGTGGTTTATGCCCGACTAATTACTGATGGCCAAGATCATGGAGTGCATGgtagttacatactttaaacaccctaaattctgctattacattcagacttaaattaatta-acattatgctcaatttgtag-
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G15320.1 (Glycine max), 5'ss of exon 5
TGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATGgtaactgctgagtccacttttaacaagctgtggaaaatattctatatcatattatttatatgacaatttcactttattag
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-GATATCTTCTTG---CGATTACTGAATATGATTTTAACTCCTTTGATGCTGATTTAAACAGTGGTGGCCTGGTGGATTGGgtaaagtgtcaacac-atgccgttgtttag---------------------------------------------------------
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G16760.2 (Arabidopsis thaliana), 5'ss of exon 5
TGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATGgtaactgctgagtccacttttaacaagctg-----tggaaaatattctatatcatattatttatatgacaatttcactttattag
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TGGTGGCCTGGTGGTTTGGGAAAAGTTTCTACTCATGCTGTTGTTTACGCTCGTCTCATAACTAACGGAAAAGACTACGGTATCCATGgtatgtaccgggaaaagtttccagtattttttttttgttcaatttttcttgcttgggtattgctttcttaaactttctcttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71863239|gb|DT012294.1|DT012294EST: TGTTCTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATG GTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCA
genomic: TGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATGgtaactgctg ... actttattagGTTTCATCGTCCAGCTGCGGAGTTTGGAAGATCATTTACCTCTTCCGGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATGgtaactgctgagtccacttttaacaagctgtggaaaatattctatatcatattatttatatgacaatttcactttattag
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