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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTGCTTCTTGATAACGAGGCCATTTATGATATTTGCAGGCGCTCACTTGATATTGAGCGCCCCACCTATACCAACCTTAACCGCCTAGTTTCTCAGgtatttgtcttatgttattgcactttttgctttatctcacgtatgaatcaattagtgccctaacttttaatgtctgattcag

Basic information

species Vitis vinifera
transcript Vv00s0373g00010.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0373g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G04750.1 (Glycine max), 5'ss of exon 3
TGCTGTGCTTCTTGATAACGAGGCCATTTATGATATTTGCAGGCGCTCACTTGATATTGAGCGCCCCACCTATACCAACCTTAACCGCCTAGTTTCTCAGgtatttgtct------------tatgttattgcactttttgct---ttatctcacg----tatgaatcaattagtgccctaacttttaatgtctgattcag
||| ||||| ||||||||||| ||||| ||||||||||||||||| || ||||| |||||| | ||||| || || |||||||||||| ||||||||||||| |  || |            || |||    ||   | |||    | || | |||    ||  |   | ||||| |   || | |||   |||   ||| 
TGCCGTGCTACTTGATAACGAAGCCATATATGATATTTGCAGGCGTTCCCTTGACATTGAGAGACCCACTTACACTAACCTTAACCGCTTAGTTTCTCAGgtttgcgtttcttcaacacttataagttgaaacaaactctgcaatatcattttacgagtctaccatcaatttagtccttcaagtattaccctctttctca-

upper sequence: Vv00s0373g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G40550.1 (Glycine max), 5'ss of exon 3
TGCTGTGCTTCTTGATAACGAGGCCATTTATGATATTTGCAGGCGCTCACTTGATATTGAGCGCCCCACCTATACCAACCTTAACCGCCTAGTTTCTCAGgtatttgtct----------tatgttattgcactttttgctttatctcacgtatgaatcaattagtgccctaacttttaatgtctgattcag---------
||| ||||| ||||| || || ||||| ||||||||||||||||| || ||||| |||||  | ||||| || || |||||||| ||| ||||||||||||| | ||| |          ||  ||    ||   | |||  ||||     ||||| | ||  |      ||   ||| | || | |  |           
TGCCGTGCTACTTGACAATGAAGCCATATATGATATTTGCAGGCGTTCCCTTGACATTGATAGACCCACTTACACAAACCTTAATCGCTTAGTTTCTCAGgtttatgtttcttcaacacataaattgaaacaaactctgcaatatcattt-tatgagtaaaccatcaatttagtctttcaagtattaccctatttgtcaaa