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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAGgtattaactctttgttgttttcgcttttttcttttatggcctacttatgttttttctccttacataaattttatgccccttacttttttctgagtactgaccctttggactttttttttttttgtacttag

Basic information

species Vitis vinifera
transcript Vv00s0370g00030.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0370g00030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G31430.1 (Glycine max), 5'ss of exon 15
GTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAGgtattaactctttgttgttttcgcttttttcttttatggcctacttatgttttttctccttacataaattttatgccccttacttttttctg-agtactgaccctttggactttttttttttttgtacttag
||||||||||||||  ||||||| || || || | ||||| |||||||||||| |||||||||||||| |    | ||  ||  ||  |   | || ||| |||   ||  ||||| || |  | |||  |  |||   | |  |  |  |  |  || || ||| |   | || | | ||| |||            
GTTGAAATAGATGGCAAGGTCTTTGGTAAAGGTATTGGATTAACATGGGATGAGGCTAAAATGCAGgtctgttgttttctttaattatgaaatattattt-atgaa-tatatatgtcttgttccattaatttgattaacttcttcacatatggtgttggagcactaaa--tatgcattctttctttag----------

upper sequence: Vv00s0370g00030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G07800.1 (Glycine max), 5'ss of exon 15
GTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAGgtattaactctttgttgttttcgcttttttcttttatggcctacttatgttttttctccttacataaattttatgccccttacttttttctgagtactgaccctttggactttttttttttttgtacttag
|||||||||||||| ||| |||| || || ||   ||||| ||||||||| || ||||||||||||||||     |||| || || |    | ||  ||  ||    |   | ||| || | |   || || ||||| ||      ||  || |      |  ||      ||    | |   |||||  |  | ||
GTTGAAATAGATGGTCAGATCTTTGGTAAAGGGTTTGGATTAACATGGGAAGAGGCTAAAATGCAGgtatcc-tactttctttttatgaaatattatttacata---tgtgtgtgtgttctatgtataaatgaatttgat------taacttctctcatatggtgtttgggtgctaatatgcctttttaatcttcag

upper sequence: Vv00s0370g00030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G25010.1 (Glycine max), 5'ss of exon 15
GTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAGgtattaactctttgttgttttcgcttttttcttttatggcctacttatgttttttctccttacataaattttatgccccttacttttttctg-agtactgaccctttggactttttttttttttgtacttag
|| |||||||||||  || |||| || || || | ||||| |||||||||||| ||||||||||||||     || ||  ||  |||   | |    | ||||     |  ||||| ||    | |||  |  |||   | |  |  |  |     || || ||| |   | || | | ||| |||            
GTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAGgt-----ctgttgttttctttaattatgaaatattattatgaatatatgtcttactccattaacttgattaacttcttcacatatggcgttggagcactaaa--tatgcattctttctttag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29784996|gb|CB341604.2|CB341604
EST:     AGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAG                         GCTGCTGAAAAGGCCCTTGGAAGTCTAAAGTCTATGCTTGGTCAATTTAGT
genomic: AGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAGgtattaactc ... ttgtacttagGCTGCTGAAAAGGCCCTTGGAAGTCTAAAGTCTATGCTTGGTCAATTTAGT
EST: gi|161708801|gb|FC060073.1|FC060073
EST:     AGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAG                         GCTGCTGAAAAGGCCCTTGGAAGTCTAAAGTCTATGCTTGGTCAATTTAGT
genomic: AGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAGgtattaactc ... ttgtacttagGCTGCTGAAAAGGCCCTTGGAAGTCTAAAGTCTATGCTTGGTCAATTTAGT