Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGCAGGATAAAAAACAGACCAAGTCAATCATTAGAGAGCGAGTTGATGGGTTGGTAAATCGTTTTTCACAAAGAATGGATCCCATAGACTGGCTTACgtaagttcttttatgagtattcttcattaaaagtttgaagttttgaaagtcttattttatttttatttttatttatactgttcctgtgtttttaaatttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0340g00080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G34570.1 (Glycine max), 5'ss of exon 4
GGAAGCAGGATAAAAAACAGACCAAGTCAATCATTAGAGAGCGAGTTGATGGGTTGGTAAATCGTTTTTCACAAAGAATGGATCCCATAGACTGGCTTACgtaagt-----tcttttatgagtattcttcattaaaagtttgaagttttgaaagtcttattttat-ttttatttttatttatactgttcctgtg-tttttaaatttg
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AGAAGCATGACCAAAGTTTGACAAACTCAGCCATTAGAGAACGTTCAAATCAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaagtctcattcttccggtcaagttgttcctttattgttgtatgt---ggaaggaacacaggatgtgctatccatcaacagatggcttgtgtaattattaca----
upper sequence: Vv00s0340g00080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G32980.1 (Glycine max), 5'ss of exon 4
GGAAGCAGGATAAAAAACAGACCAAGTCAATCATTAGAGAGCGAGTTGATGGGTTGGTAAATCGTTTTTCACAAAGAATGGATCCCATAGACTGGCTTACgtaagttc--ttttatgagtattcttcattaaaagtttgaagttttgaaagtcttattttatttttatttttatttatactgttcctgtgtttttaaatttg-
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GGAAGCAGGACCAAAGTTTGACAACCTCAGCCATTAGAGAACGTTCAAATCAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaagtctcattcttccgatcaagttgttcctttgttttagtatgtggtaggaacacaagatgtgcaatcc-atcaacagttggcttatgtaat--gattaaa
upper sequence: Vv00s0340g00080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G16300.1 (Arabidopsis thaliana), 5'ss of exon 3
GGAAGCAGGATAAAAAACAGACCAAGTCAATCATTAGAGAGCGAGTTGATGGGTTGGTAAATCGTTTTTCACAAAGAATGGATCCCATAGACTGGCTTACgtaagttcttttatgagtattcttcattaaaagtttgaagt---tttgaaagtcttattttatttttatttttatttatact---gttcctgtgtttttaaatttg------
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GAAGGCAGGATCAACAGAAAACAAAGTTAGTCAATAGAGGTCGCATTGATGGAGTGACCTCCCAACTAACCCAAAAGTTGGATCCCATAGACTGGCTTACgtaagaaatcttatccctaatctttacctacgtcatatattatcttttactattttggctgctctatcgtcttgttgtcactctgattctagtattttgaatatcaaaaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712618|gb|FC061941.1|FC061941EST: GGGTTGGTAGATCGTTTTTCACAGAGAATGGATCCCATAGACTGGCTTAC GTATGAGCCTTACCTCTGGGAGAACGAGAGGCAAGCATACCTCCGGCATGC
genomic: GGGTTGGTAAATCGTTTTTCACAAAGAATGGATCCCATAGACTGGCTTACgtaagttctt ... taaatttcagGTATGAGCCTTACCTCTGGGAGAACGAGAGGCAAGCATACCTCCGGCATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGCAGGATAAAAAACAGACCAAGTCAATCATTAGAGAGCGAGTTGATGGGTTGGTAAATCGTTTTTCACAAAGAATGGATCCCATAGACTGGCTTACgtaagttcttttatgagtattcttcattaaaagtttgaagttttgaaagtcttattttatttttatttttatttatactgttcctgtgtttttaaatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa