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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttctatgagtttcataattgcatattacctgtttgtgattttgcttccatcagcagattagaatttttgtgctctgcttatattatagtatta...

Basic information

species Vitis vinifera
transcript Vv00s0323g00040.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0323g00040.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G03320.1 (Glycine max), 5'ss of exon 3
TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttctatgagtttcataattgcatattacctgtttgtgattttgcttccatcagcagattagaatttttgtgctctgcttatattatagtatta
|||||   | |||| ||||| ||  | ||  | ||||| ||||| ||||| |||||||| || ||| ||||||||||||||||||| ||| |||  |||||  |  | |     || | |  ||  |  ||| ||   |    ||| ||||   ||| |  |||     |   |                        
TCTCGTCCTCTTCCCGATACTCCGCAAGACCTCATTGAATACTTCCTTGACACTGAAGCTCAGGAGATTGAGTTTGAGATTGCAAGAATGAGACCAAGgttcctacttttc---ttccttttttttaatttagctcaat-cagtttcgcttgtctcatcgaattcactctgcag------------------------

upper sequence: Vv00s0323g00040.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G14730.1 (Glycine max), 5'ss of exon 3
TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttctatgagtttcataattgcatattacctgtttgtgattttgcttccatcagcagattagaatttttgtgctctgcttatattatagtatta-
||||| | | | || |||||     |  |  | ||||| ||||| ||||| |||||||| || ||| || |||||||||||||||| ||| |||  || ||  |  | |   |  ||          |  | ||| ||| | || | ||| | |||||      |       |    |   ||      || | || | 
TCTCGTGATGTACCCGATACTATGCAATACCTCATTGAATACTTCCTTGACACTGAAGCTCAGGAGATTAAgtttgagattgcaagaatgagaccaagattcctacttttcaacctt----------ttcttcctttttttaatctagct-caatcagttttgcatgtcccatcgaattcactctgcagattgaatgag

upper sequence: Vv00s0323g00040.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G62780.1 (Arabidopsis thaliana), 5'ss of exon 3
TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttctatgagtttcata-attgcatattacctgtttgtgattttgcttccatcagcagattagaatttttgtgctctgcttatattatagtatta-----
||| | ||| | ||||||||  | | |||| |||||||||||||||||||||||||||| || ||| |||||| |||||| || ||| |  ||   ||||| ||        | |||  ||  ||||| |  || |||| |     |||| ||  | |  |  ||    |  ||  | |       |      || ||      
TCTAGAGTTGTACCGGATACTGCTGCGGAGCTGATTGAGTACTTTCTTGATACTGAAGCTCAGGAGATTGAGTATGAGATCGCTAGGCTTAGAGGAAGgtttgtc------aatttttgtatgttgcacacaacgtgttcgatgaattgcctctgtgaagatgttttggtgctttagtttattaagtgaatccgtttttgttga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045677|gb|FQ440862.1|FQ440862
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACCTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|18458960|gb|BM437238.1|BM437238
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|28961923|gb|CB340981.1|CB340981
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|349812568|gb|FQ407187.1|FQ407187
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|352782030|gb|FQ469328.1|FQ469328
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351013034|gb|FQ433761.1|FQ433761
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|294966047|gb|GW837414.1|GW837414
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|349818883|gb|FQ411578.1|FQ411578
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351024091|gb|FQ423514.1|FQ423514
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|28964858|gb|CB343891.1|CB343891
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|349825131|gb|FQ415678.1|FQ415678
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|28964910|gb|CB343943.1|CB343943
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|110372937|gb|EC937134.1|EC937134
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351052007|gb|FQ450698.1|FQ450698
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351023061|gb|FQ430936.1|FQ430936
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351014068|gb|FQ434220.1|FQ434220
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAAGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351034821|gb|FQ458178.1|FQ458178
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCCCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|349810037|gb|FQ398662.1|FQ398662
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|349818743|gb|FQ409277.1|FQ409277
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|349833110|gb|FQ416488.1|FQ416488
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|26261480|gb|CA812543.1|CA812543
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351035150|gb|FQ458507.1|FQ458507
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCCCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351044715|gb|FQ443246.1|FQ443246
EST:     GATACTGAAGCACAAGAGTTTAAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|110427789|gb|EC994240.1|EC994240
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351024906|gb|FQ433323.1|FQ433323
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351051811|gb|FQ455225.1|FQ455225
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|32248420|gb|CD714239.1|CD714239
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|32244984|gb|CD710803.1|CD710803
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|349832594|gb|FQ421952.1|FQ421952
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351043470|gb|FQ428942.1|FQ428942
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|349823321|gb|FQ402520.1|FQ402520
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351014302|gb|FQ437304.1|FQ437304
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|352769266|gb|FQ471415.1|FQ471415
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|110699852|gb|EE077230.1|EE077230
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351013822|gb|FQ433974.1|FQ433974
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATTCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351017299|gb|FQ435651.1|FQ435651
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351044247|gb|FQ447601.1|FQ447601
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|110684606|gb|EE062073.1|EE062073
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351025451|gb|FQ435143.1|FQ435143
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351040609|gb|FQ438153.1|FQ438153
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|351045771|gb|FQ440956.1|FQ440956
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|349825132|gb|FQ415679.1|FQ415679
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAA                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|51050325|gb|CO818492.1|CO818492
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACATAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|349830964|gb|FQ418248.1|FQ418248
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG
EST: gi|18459240|gb|BM437518.1|BM437518
EST:     GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAG                         GTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACTGGGACAACTTCG
genomic: GATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttc ... aaatttgcagGTTGGACAAGGATTTTTTCTCACACTTGCAATCTGAACGGGGACAACTTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTCGGGTTATTCCGGATACCCCAGAGGAGTTGATTGAGTACTTTCTTGATACTGAAGCACAAGAGTTTGAGTTTGAGATTGCAAGGATGCGACACAGgttggttttctatgagtttcataattgcatattacctgtttgtgattttgcttccatcagcagattagaatttttgtgctctgcttatattatagtatta

- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG