1 5' 3' | 2 5' 3' | 3 5' 3' |
AAGATTATTATGGCTGTTGATGCTAGCTGGAACTCCTCTAGTCTATGAGGTACTGCTGTACATCACCAATAAGAGCAGAAGATACTCAAATTTAGGCAAAgtaaggaaacttttcttgttcatttctcattctgcatttgaaggccataaaaaatttaaaaaaaaattgaattaaaaaaaaaaaaatcagtgagcttcag...
species | Vitis vinifera |
transcript | Vv00s0301g00050.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TACTGCTGTACATCACCAATAAGAGCAGAAGATACTCAAATTTAGGCAAA CTTGATCTCCCGTTTCTGGAATGGCAAACTGGATTGCAGGGAACACAAATTEST: gi|22013890|gb|BQ798924.1|BQ798924
genomic: TACTGCTGTACATCACCAATAAGAGCAGAAGATACTCAAATTTAGGCAAAgtaaggaaac ... atattttcagCTTGATCTCCCGTTTCTGGAATGGCAAACTGGATTGCAGGGAACACAAATT
EST: TACTGCTGTACATCACCAATAAGAGCAGAAGATACTCAAATTTAGGCAAA CTTGATCTCCCGTTTCTGGAATGGCAAACTGGATTGCAGGGAACACAAATTEST: gi|30329180|gb|CD012442.1|CD012442
genomic: TACTGCTGTACATCACCAATAAGAGCAGAAGATACTCAAATTTAGGCAAAgtaaggaaac ... atattttcagCTTGATCTCCCGTTTCTGGAATGGCAAACTGGATTGCAGGGAACACAAATT
EST: TACTGCTGTACATCACCAATAAGAGCAGAAGATACTCAAATTTAGGCAAA CTTGATCTCCCGTTTCTGGAATGGCAAACTGGATTGCAGGGAACACAAATT
genomic: TACTGCTGTACATCACCAATAAGAGCAGAAGATACTCAAATTTAGGCAAAgtaaggaaac ... atattttcagCTTGATCTCCCGTTTCTGGAATGGCAAACTGGATTGCAGGGAACACAAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATTATTATGGCTGTTGATGCTAGCTGGAACTCCTCTAGTCTATGAGGTACTGCTGTACATCACCAATAAGAGCAGAAGATACTCAAATTTAGGCAAAgtaaggaaacttttcttgttcatttctcattctgcatttgaaggccataaaaaatttaaaaaaaaattgaattaaaaaaaaaaaaatcagtgagcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa