Sequence
atgc intronic sequence ATGC exonic sequenceACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCTTGgtaaggcacttaattgctaagttgctcttcttctgctatatctactgccaaattttctcattgcaatctgattggctgagtccttcacccataataatag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 4
ACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCTTGgtaaggcacttaattgctaagttgctcttcttctgctatatctactgccaaattttctcattgcaatctgattggctgagtccttcacccataataatag----
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ACTTGGTTTCTTCTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATTAGAAACCTTACAGATGTTAAAGTTTTATCCGAATGGGGGATCCTTTTCTTGgtaagatacatctttgc--agctactctagttattattt-tttatttcatttgtctgtcaccttaaa-tgaagcattgaaactgtgatatataaacatatttta
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 3
ACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCTTGgtaaggcacttaatt---gctaagttgctcttcttctgctatatctactgccaaat-tttctcattgcaatctgattggctgagtccttcacccataataatag
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ACTTGGTTTCTTCTGTGCTGGTGTGGTACTGAATCAGTTTGGTTTAATTAGAAACCTTACAGATGTCAAAGCTTTATCAGAATGGGGGATCCTTTTCTTGgtaagatacatcattgcagctactctggttattttcttttctttttttccccatttgtttgtcaccctcaaatgaatcattgaaactttgatttataaac----
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 3
ACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCTTGgtaaggcacttaattgctaagttgctcttcttctgctatatctactgccaaattttctcattgcaatctgattggctgagtcct--tcacccataataatag
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ACTTGGTTTCTTCTTTGCTGGTGTTGTACTCAACCAATTTGGTTTGATTAGAAATCTCACAGATGTTAAAGTTCTTTCAGAATGGGGGATTCTTTTCCTGgtgag-cattg---tgcataatta-tgttcataggctttacgtgttgaatga-------gtagtaat--gactggccttatcctgattatctttggcag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706912|gb|FC056800.1|FC056800EST: GTTCTATCTGAGTGGGGGATTCTTTTCTTG CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCA
genomic: GTTCTATCTGAGTGGGGGATTCTTTTCTTGgtaaggcact ... tccttggcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTGGTTTCTTCTTTGCGGGGGTTGTGCTCAATCAGCTTGGACTGATTCGGAATCTTACAGATGTTAAAGTTCTATCTGAGTGGGGGATTCTTTTCTTGgtaaggcacttaattgctaagttgctcttcttctgctatatctactgccaaattttctcattgcaatctgattggctgagtccttcacccataataatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG