Sequence
atgc intronic sequence ATGC exonic sequenceCTGCTGTACGCGAGAAGTCGTCAAATGGCTATTTGCTTATTGCAGCAAGTGGAGGGCTGAACCAACAAAGAACAGGAgtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgtgtcaacttcataaacatattataaacttgtttcagttatttacttgtttatcctttttgcatggaatttacaatccatttcctgcactcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G15170.1 (Glycine max), 5'ss of exon 3
CTGCTGTACGCGAGAAGTCGTCAAATGGCTATTTGCTTATTGCAGCAAGTGGAGGGCTGAACCAACAAAGAACAGGAgtaagtataaagattcttctgtagc-tgctacatgttcattaaaacatatatagtggaaggatatgct-gttgccgtgtcaacttcataaacatattataaacttgtttcagttatttacttgtttatcctttttgcatggaatttacaatccatttcctgcactcag
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CTGCTGTACGCGAGCGCAAGTCTAAAGGCTACTTGCTAATTGCAACTAGTGGAGGACTGAACCAACAAAGAACTGGGgtaagtatgacataagttttatgatatggaatattgtcattgagacat------tgtaagaatcttctagaagatctgctggttac-tgatttgatgatcaactacc-------------------------------------------------------------
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G03640.1 (Glycine max), 5'ss of exon 4
CTGCTGTACGCGAGAAGTCGTCAAATGGCTATTTGCTTATTGCAGCAAGTGGAGGGCTGAACCAACAAAGAACAGGAgtaagtataa----agattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgt-gtcaacttcataaacatattataaacttgtttcagttatttacttgtttatcctttttgcatggaatttacaatccatttcctgcactcag
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CTGCTGTGCCTGAGAGGATGTCAAATGGCTACTTGCTTATTGGTACTAGTGGAGGATTGAACCAACAAAGAACTGGGgtgagtgggacataagtttcatcataggctacattatggtcatt----tgtgttttgtgtatg-atctgctgtcttagttgctcgcctcgcctaccgattaaaag------------------------------------------------------------------
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G16650.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGCTGTACGCGAGAAGTCGTCAAATGGCTATTTGCTTATTGCAGCAAGTGGAGGGCTGAACCAACAAAGAACAGGAgtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgtgtcaacttcataaacatattataaacttgtttcagttatttacttgtttatcctttttgcatggaatttacaatccatttcctgcactcag
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CTGCTGTCCAGGAGCAGTCATCTAATGGATATTTGCTTATTGCAGCTAGTGGAGGCCTTAACCAACAAAGAACAGGAgtaagtgaaa------ttatgtgtcaagaataaacgtgttaggatat-tacaat-------tatattgcttatttgcccaactaaaaaagat----tatgctgcttattgtccttagggagttaggacctgcattttgaaa---ataatgttctctttgtgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706756|gb|FC056366.1|FC056366EST: GCAGCAAGTGGAGGGCTGAACCAACAAAGAACAGGA ATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTA
genomic: GCAGCAAGTGGAGGGCTGAACCAACAAAGAACAGGAgtaagtataa ... ctgcactcagATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCTGTACGCGAGAAGTCGTCAAATGGCTATTTGCTTATTGCAGCAAGTGGAGGGCTGAACCAACAAAGAACAGGAgtaagtataaagattcttctgtagctgctacatgttcattaaaacatatatagtggaaggatatgctgttgccgtgtcaacttcataaacatattataaacttgtttcagttatttacttgtttatcctttttgcatggaatttacaatccatttcctgcactcag
- - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC