Sequence
atgc intronic sequence ATGC exonic sequenceAGGTTGGGGCAAAGCAAACCCATTTATAATGCATTTAAAGCTATTCAAGAATCTCCTGAGTGGCAAACACTGAGTGATGCTCAGAAACGTATAGTGGACTgtgagtatacttttgtaatggaaattttttgttcattttgttccatgtgagtggttaaccttatggcaggaaactgatatattacgaaaactaaaatatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G33490.1 (Glycine max), 5'ss of exon 3
AGGTTGGGGCAAAGCAAACCCATTTATAATGCATTTAAAGCTATTCAAGAATCTCCTGAGTGGCAAACACTGAGTGATGCTCAGAAACGTATAGTGGACTgtgagtatacttttgtaatggaaattttttgttcattttgttccatgtga-gtgg-ttaaccttatggcaggaaactgatatattacgaaaactaa--aatatt-----
|| |||| ||||||||||| |||||||||||||| ||||| ||||| || |||||||| ||||| ||||| |||||||||| |||||||| || || || ||| | | ||| | ||| | ||||| ||||| |||| || | | | | | | | | ||| ||| | |||||
AGACTGGGTCAAAGCAAACCTATTTATAATGCATTCAAAGCCATTCAGGAGTCTCCTGATTGGCAGACACTCAGTGATGCTCGAAAACGTATTGTTGAAAgtaagt----tatcaagatg----tctttcagctgtgctgttct-tgtgatgtggatttatttgagtactgccatgttttttatgcttaaagttgcttgatattgctat
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G02480.1 (Glycine max), 5'ss of exon 3
AGGTTGGGGCAAAGCAAACCCATTTATAATGCATTTAAAGCTATTCAAGAATCTCCTGAGTGGCAAACACTGAGTGATGCTCAGAAACGTATAGTGGACTgtgagtatacttttgtaatggaaattttttgttcattttgttccatgtgagtg-gttaaccttatggcaggaaactgatatattacgaaaactaaaatatt---
|| |||| ||||||||||| ||||||||||| || ||||| ||||| || |||||| | ||||| ||||| |||||||||| ||||||||||| || || ||| | | ||| || |||| | || | |||||| | || | || || | | || | | | ||||
AGACTGGGTCAAAGCAAACCTATTTATAATGCGTTCAAAGCCATTCAGGAGTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAAgtaagt----tatcaagatgtcttgttgttgtgctgttcttgtgatgtgaatttatttgagtactgccatgttttttatgctaaaagttgcttgaaattgctct
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G10540.1 (Arabidopsis thaliana), 5'ss of exon 3
AGGTTGGGGCAAAGCAAACCCATTTATAATGCATTTAAAGCTATTCAAGAATCTCCTGAGTGGCAAACACTGAGTGATGCTCAGAAACGTATAGTGGACTgtgagta--tacttttgtaatg---gaaattttttgttcattttgttccatgtgagtggttaaccttatggcaggaaac-tgatatattacgaaaactaaaatatt------------------------------
|||||||| || |||||||||||||| ||||||||||| ||||||| ||||||||| || ||| | || |||| || |||| |||| |||| || | |||| || | | | ||| | || |||| | ||| || ||| ||||| | | |||||| || || | | ||
AGGTTGGGACAGAGCAAACCCATTTACAATGCATTTAAGGCTATTCGAGAATCTCCAGACTGGAATTCATTGAGCGAAGCTCGTCAACGATTAGTTGAAGgcaagtaattataatcggagcataagaaggaacacaatttgttctttcctttccagtttttttttgtataagaggaatcgttttatattttcaatgctcagagatatgtgctaatatagtttccatgtgttttcag
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G65620.1 (Arabidopsis thaliana), 5'ss of exon 3
AGGTTGGGGCAAAGCAAACCCATTTATAATGCATTTAAAGCTATTCAAGAATCTCCTGAGTGGCAAACACTGAGTGATGCTCAGAAACGTATAGTGGACTgtgagtatacttttgtaatggaaattttttgttcattttgttccatgtgagtggttaaccttatggcaggaaactgatatattacgaaaactaaaatatt
||||||||||||||||| || ||||| ||||| ||||||||||||| ||||||||||| ||| | | || ||||| |||| |||| |||| || | |||| | || | ||||| || ||| || ||||||| || || | | ||| | |
AGGTTGGGGCAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTGGTCATCGCTCAGTGAAGCTCGTCAACGCTTAGTAGAAGgcaagtagtttcttat--tggaacattaaaacaacgtttctttcatgtgataactttggttt-cagtatgaatttcag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110723244|gb|EE100338.1|EE100338EST: ATCTCCTGAGTGGCAAACACTGAGTGATGCTCAGAAACGTATAGTGGACT CCCAAATAAAGCAAGCAGTTCTTAGCGGTGTTTCTCTTGAAGATGATAAAA
genomic: ATCTCCTGAGTGGCAAACACTGAGTGATGCTCAGAAACGTATAGTGGACTgtgagtatac ... tcccgtgcagCCCAAATAAAGCAAGCAGTTCTTAGCGGTGTTTCTCTTGAAGATGATAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGTTGGGGCAAAGCAAACCCATTTATAATGCATTTAAAGCTATTCAAGAATCTCCTGAGTGGCAAACACTGAGTGATGCTCAGAAACGTATAGTGGACTgtgagtatacttttgtaatggaaattttttgttcattttgttccatgtgagtggttaaccttatggcaggaaactgatatattacgaaaactaaaatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgaaaa