Sequence
atgc intronic sequence ATGC exonic sequenceCTTGAGTGGAGTTAAATATTCTGAGGAACCAGCTATATTTGCATGGGAGCTCATGAATGAGCCTCGGTGTGCATCAAGTTCTTCTGCTCCTATTCTGCAGgtaaatagtagaacttgctgtctcccttttttctcctcctgtattgttgcctttcatgtgggaagaaaagtgtgagggtaacttatggaggaggagctgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0187g00280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g20620.1 (Oryza sativa), 5'ss of exon 3
CTTGAGTGGAGTTAAATATTCTGAGGAACCAGCTATATTTGCATGGGAGCTCATGAATGAGCCTCGGTGTGCATCAAGTTCTTCTGCTCCTATTCTGCAGgtaaatagtagaacttgctgtctcccttttttctcctcctgtattgttgcctttcatgtgggaagaaaagtgtgagggtaacttatggaggaggagctgg
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TTACAGTCGAATAAGATACTCTGATGAACCTGCTATATTTGCTTGGGAACTCATGAATGAGCCTAGGTGTGTGTCCAACTCATCTGGCCCCTACCTTCAGgtaat--atggtactatccatttccatttt--caacaacaatgcagttgtc--------agagtggaaaccctgatggttccttaacag-----------
upper sequence: Vv00s0187g00280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G110993_T01 (Zea mays), 5'ss of exon 3
CTTGAGTGGAGTTAAATATTCTGAGGAACCAGCTATATTTGCATGGGAGCTCATGAATGAGCCTCGGTGTGCATCAAGTTCTTCTGCTCCTATTCTGCAGgtaaatagtagaacttgctgtctcccttttttctcctcctgtattgttg-----cctttcatgtgggaagaa-aagtgtgagggtaacttatggaggaggagctgg
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TTACAGTGGAATCAAATATTGTGATGAACCTGCTATATTTGCTTGGGAACTCATGAATGAGCCTAGATGTGTGTCCAATTCATCGGGTCCGTATATTCAGgtagat--tactatgtgaagaaccccttcgcttagaaagtgggcatatgagaaatcattaattccctatcattaaacctggagtttatttgcag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27579740|gb|CB002435.1|CB002435EST: TCATGAATGAGCCTCGGTGTGCATCAAGTTCTTCTGCTCCTATTCTGCAG GCTTGGATCACAGAAATGGCTGCATATATCAAGAGTTTGGACCAAAAGCAC
genomic: TCATGAATGAGCCTCGGTGTGCATCAAGTTCTTCTGCTCCTATTCTGCAGgtaaatagta ... tggggaacagGCTTGGATCACAGAAATGGCTGCATATATCAAGAGTTTGGACCAAAAGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGAGTGGAGTTAAATATTCTGAGGAACCAGCTATATTTGCATGGGAGCTCATGAATGAGCCTCGGTGTGCATCAAGTTCTTCTGCTCCTATTCTGCAGgtaaatagtagaacttgctgtctcccttttttctcctcctgtattgttgcctttcatgtgggaagaaaagtgtgagggtaacttatggaggaggagctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG