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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgcttgtgcactcccatttaagcttagctctactcttgtgttataatttattgctatactcattcttatagttttacacttaatctgcag

Basic information

species Vitis vinifera
transcript Vv00s0181g00120.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351013150|gb|FQ424855.1|FQ424855
EST:     ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG                         ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
genomic: ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgct ... taatctgcagATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
EST: gi|351039899|gb|FQ464937.1|FQ464937
EST:     ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG                         ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
genomic: ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgct ... taatctgcagATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
EST: gi|351018924|gb|FQ426423.1|FQ426423
EST:     ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG                         ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
genomic: ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgct ... taatctgcagATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
EST: gi|33404273|gb|CF209900.1|CF209900
EST:     ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG                         ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
genomic: ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgct ... taatctgcagATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
EST: gi|351047461|gb|FQ454953.1|FQ454953
EST:     ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG                         ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
genomic: ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgct ... taatctgcagATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
EST: gi|351028547|gb|FQ444828.1|FQ444828
EST:     ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG                         ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
genomic: ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgct ... taatctgcagATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
EST: gi|351052700|gb|FQ453808.1|FQ453808
EST:     ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG                         ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
genomic: ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgct ... taatctgcagATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
EST: gi|33404557|gb|CF210184.1|CF210184
EST:     ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG                         ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
genomic: ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgct ... taatctgcagATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
EST: gi|352798434|gb|FQ480459.1|FQ480459
EST:     ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG                         ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
genomic: ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgct ... taatctgcagATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
EST: gi|351024039|gb|FQ423462.1|FQ423462
EST:     ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGACGAAG                         ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
genomic: ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgct ... taatctgcagATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
EST: gi|349832306|gb|FQ420867.1|FQ420867
EST:     ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG                         ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC
genomic: ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGgtaatatgct ... taatctgcagATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACC