Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCACAGATTGCTTCTGCCTCAAAATGAGGCAGCACAAGCTGGGACCCGGTACAATGTACCCTTGATGAACTCCCTTGTCCTTTATGTGGGAATGCAGgtaatgtgccccctgcccccctccctttttattttttttattttttttatttctctctctcaccttgtaagttttggttaagtaacaaaccgttggttctcttcgtattattgagatattctctttggtttattaatctccaagtggatgtatgtattgcag

Basic information

species Vitis vinifera
transcript Vv00s0144g00210.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0144g00210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G27270.1 (Glycine max), 5'ss of exon 49
AAAGCACAGATTGCTTCTGCCTCAAAATGAGGCAGCACAAGCTGGGACCCGGTACAATGTACCCTTGATGAACTCCCTTGTCCTTTATGTGGGAATGCAGgtaatgtgccccctgcccccctccctttttattttttttattttttttatttctctctctcaccttgtaagttttggttaagtaacaaaccgttggttctcttcgtattattgagatattctctttggtttattaatctccaagtggatgtatgtattgcag
 ||| | |   |||||||  | |  ||||| |||||    |||||||| || |||||||| || || || ||||||||||| || ||||| ||||||||||||       |  |          ||||| || |||     |   || ||   ||  |  |  | | | |||||     || |    ||   |  |||||   | | |||                                                    
GAAGGATAAGATGCTTCTCTCACCCAATGAAGCAGCCTCTGCTGGGACTCGATACAATGTGCCGTTAATTAACTCCCTTGTGCTATATGTTGGAATGCAGgta-------ctttaaattggaaacttttaatatttgcctctgcattaatgagtcaataaccacat-tgagtttcaa--aattgttgaagtttgtgttctaagcatgtta----------------------------------------------------