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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACGGAAGCAGATCTTTACAAGCAGCTTTCTTATTTCTGCCACGTATTGGATACTGTTCGATGCATTGAGAAGgtttatttacttttcttcttcatgagatttgtgtgcgatctatttctggcctattaatccagcatttatgtgcaaggaaacctattcaatcttttattgtgttgcgattttgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g00470.t01
intron # 29
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33408792|gb|CF214419.1|CF214419
EST:     AGCTTTCTTATTTCTGCCACGTATTGGATACTGTTCGATGCATTGAGAAG                         ATGGAGGTGAGCACCAGGATCCCAATTGAGAAGGAGTTTTCAAGAATTCGG
genomic: AGCTTTCTTATTTCTGCCACGTATTGGATACTGTTCGATGCATTGAGAAGgtttatttac ... gattttgcagATGGAGGTGAGCACCAGGATCCCAATTGAGAAGGAGTTGGCAAGAATTCGG
EST: gi|51051107|gb|CO818889.1|CO818889
EST:     AGCTTTCTTATTTCTGCCACGTATTGGATACTGTTCGATGCATTGAGAAG                         ATGGAGGTGAGCACCAGGATCCCAATTGAGAAGGAGTTTTCAAGAATTCGG
genomic: AGCTTTCTTATTTCTGCCACGTATTGGATACTGTTCGATGCATTGAGAAGgtttatttac ... gattttgcagATGGAGGTGAGCACCAGGATCCCAATTGAGAAGGAGTTGGCAAGAATTCGG
EST: gi|33408710|gb|CF214337.1|CF214337
EST:     AGCTTTCTTATTTCTGCCACGTATTGGATACTGTTCGATGCATTGAGAAG                         ATGGAGGTGAGCACCAGGATCCCAATTGAGAAGGAGTTTTCAAGAATTCGG
genomic: AGCTTTCTTATTTCTGCCACGTATTGGATACTGTTCGATGCATTGAGAAGgtttatttac ... gattttgcagATGGAGGTGAGCACCAGGATCCCAATTGAGAAGGAGTTGGCAAGAATTCGG