1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
GTACACGGGCAAAGTAGATGACCTTGTCAAGGACAGAATTGAGGCTCTTAAAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgtgagaatttctcatgccattttgtaattattgctttcttctagaatgatttaattctcttggttcatgccatggactggccaaaactgcactggtttgtaccattttgttctttgaattttcaataatatataagacaaggagttgatgctgatgcttctttgttgtatgcag
species | Vitis vinifera |
transcript | Vv06s0004g06860.t01 |
intron # | 29 |
splice site | 5' |
intron type | U2 |
EST: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAG AATATGTATGCACAGGTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCAEST: gi|30129894|gb|CB915233.1|CB915233
genomic: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
EST: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAG AATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCAEST: gi|30252228|gb|CB969779.1|CB969779
genomic: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
EST: GAGAGACAAAAGCTAGAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAG AATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCAEST: gi|30251383|gb|CB969116.1|CB969116
genomic: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
EST: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAG AATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCAEST: gi|30252310|gb|CB969861.1|CB969861
genomic: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
EST: GAGAGACAAAAGCTAGAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAG AATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCAEST: gi|30127043|gb|CB912382.1|CB912382
genomic: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
EST: GTTGTGAAACAACAG AATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCAEST: gi|30251483|gb|CB969216.1|CB969216
genomic: GTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
EST: GAGAGACAAAAGCTAGAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAG AATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCAEST: gi|30252223|gb|CB969774.1|CB969774
genomic: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
EST: GAGAGACAAAAGCTAGAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAG AATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCAEST: gi|30252315|gb|CB969866.1|CB969866
genomic: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
EST: GAGAGACAAAAGCTAGAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAG AATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCAEST: gi|110699699|gb|EE076936.1|EE076936
genomic: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
EST: AGA-ACAAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAG AATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCAEST: gi|30251472|gb|CB969205.1|CB969205
genomic: AGAGACAAAA-GCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
EST: GAGAGACAAAAGCTAGAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAG AATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCAEST: gi|45771749|gb|CN007601.1|CN007601
genomic: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
EST: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAG AATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
genomic: AAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgt ... ttgtatgcagAATATGTATGCACAGTTACTGCCTCTTGCTTTGCCCGCTCCACCAATGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACACGGGCAAAGTAGATGACCTTGTCAAGGACAGAATTGAGGCTCTTAAAGAGACAAAAGCTAAAGAGGAGGAGGAGAAGGATGTTGTGAAACAACAGgtatggttgtgagaatttctcatgccattttgtaattattgctttcttctagaatgatttaattctcttggttcatgccatggactggccaaaactgcactggtttgtaccattttgttctttgaattttcaataatatataagacaaggagttgatgctgatgcttctttgttgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG