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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACGAGGAAAAAGGAAAAGGTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttaggagtaacttattccttataatgcatgggccattagtttgtgaatagatgagtttgctattgctctttttgtatatgcctgcagttttctct...

Basic information

species Vitis vinifera
transcript Vv16s0050g00490.t01
intron # 28
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349809590|gb|FQ414480.1|FQ414480
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349817461|gb|FQ407251.1|FQ407251
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351039026|gb|FQ457701.1|FQ457701
EST:     GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351056447|gb|FQ454308.1|FQ454308
EST:     GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGGTTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349811562|gb|FQ409558.1|FQ409558
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351044162|gb|FQ452835.1|FQ452835
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349811041|gb|FQ406029.1|FQ406029
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349818352|gb|FQ409127.1|FQ409127
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351042671|gb|FQ451086.1|FQ451086
EST:     GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349824505|gb|FQ413172.1|FQ413172
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349824556|gb|FQ413223.1|FQ413223
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349814862|gb|FQ410085.1|FQ410085
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349813697|gb|FQ413931.1|FQ413931
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351034908|gb|FQ458265.1|FQ458265
EST:     GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349811081|gb|FQ406069.1|FQ406069
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351035476|gb|FQ463321.1|FQ463321
EST:     GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351045622|gb|FQ440807.1|FQ440807
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349822506|gb|FQ412770.1|FQ412770
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGCGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349810172|gb|FQ401618.1|FQ401618
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|30305348|gb|CB982142.1|CB982142
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGANACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351038517|gb|FQ464383.1|FQ464383
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349814599|gb|FQ399239.1|FQ399239
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349819862|gb|FQ404534.1|FQ404534
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAGGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349807376|gb|FQ401368.1|FQ401368
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349814881|gb|FQ410104.1|FQ410104
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAAAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|352795665|gb|FQ480253.1|FQ480253
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349812607|gb|FQ407226.1|FQ407226
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351056626|gb|FQ442454.1|FQ442454
EST:     GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349815086|gb|FQ410309.1|FQ410309
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351047462|gb|FQ454954.1|FQ454954
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351026108|gb|FQ428120.1|FQ428120
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|71875416|gb|DT024471.1|DT024471
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351051717|gb|FQ449531.1|FQ449531
EST:     GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|349816321|gb|FQ399431.1|FQ399431
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: gi|351053468|gb|FQ459215.1|FQ459215
EST:     GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG                         GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGACGAGGAAAAAGGAAAAGGTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttaggagtaacttattccttataatgcatgggccattagtttgtgaatagatgagtttgctattgctctttttgtatatgcctgcagttttctct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataga