Sequence
atgc intronic sequence ATGC exonic sequenceATACTTAAGACTCTATTTGAGATTGTTTTATTTGAGGACTGTGGCAACCAATGGAGTCTCAGCAGACCAATGCTGAGCTTAATTCTTATCAGTGAGCAGgtgacagtttctacctctctgatttcatgtttttcttgtttgtttctttattctattaaattctattgttatattaaattccaagttccttgtggctatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 28
lower sequence: GLYMA04G00430.1 (Glycine max), 5'ss of exon 26
ATACTTAAGACTCTATTTGAGATTGTTTTATTTGAGGACTGTGGCAACCAATGGAGTCTCAGCAGACCAATGCTGAGCTTAATTCTTATCAGTGAGCAGgtgacag--tttctacctctctgatttcatgtttttcttgtttgtttctttattctattaaattctattgt-tatat-taaattccaagttccttgtggctatt
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ATTTTGAAGACCCTATTTGAGATCATATTGTTTGAAGACTGTGGGAACCAATGGAGTCTGAGTAGGCCAATGTTGAGCTTGATACTCATTAATGAGCAGgtagtggacctttttgatctctgttctattttcgttaaaaattactgcaaacatatgtgacaagctttggtacatatatatactccaggttgaagttgag----
upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 28
lower sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 20
ATACTTAAGACTCTATTTGAGATTGTTTTATTTGAGGACTGTGGCAACCAATGGAGTCTCAGCAGACCAATGCTGAGCTTAATTCTTATCAGTGAGCAGgtgacagtttctacctctctgatttcatgtttttcttgtttgtttctttattctattaaattctat-tgttatattaaattccaagttccttgtggctatt------
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ATTTTGAAGACCCTATTTGAGATCATATTGTTTGAAGACTGTGGGAACCAATGGAGTCTGAGTAGGCCAATGTTGAGTTTGATACTCATTAATGAGCAGgtagtga-----accttttcaatctc-tgttctattttcat-taaatttactgcaaacagttatatatgtaatgagctttggtacatatgatatatatactccagct
upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 28
lower sequence: AT5G06120.1 (Arabidopsis thaliana), 5'ss of exon 28
ATACTTAAGACTCTATTTGAGATTGTTTTATTTGAGGACTGTGGCAACCAATGGAGTCTCAGCAGACCAATGCTGAGCTTAATTCTTATCAGTGAGCAGgtgacagtttctacctctctgatttcatgtttttcttgtttgtttctttattct-attaaattctattgttatattaaattccaagttccttgtggctatt----
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ATATTGAAGACACTGTTTGAAATAGTTTTATTCGAGGATTGTGGCAATCAGTGGAGTCTCAGCAGACCAATGTTAAGCTTGATTCTTATAAGTGAGCAGgta----tgtgtaatttatacattt---atctctcttgtgcagttttctgttccgaatgagctttgttgttcattcatctaacttatttcaattgatttccccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712964|gb|FC062090.1|FC062090EST: AATGGAGTCTCAGCAGACCAATGCTGAGCTTA-TTCTTATCAGTGAGCAG ATTTTCACCGATCTAAA-GCTCAGATTTTGGCTTCACAG
genomic: AATGGAGTCTCAGCAGACCAATGCTGAGCTTAATTCTTATCAGTGAGCAGgtgacagttt ... tggattgcagATTTTCACCGATCTAAAAGCTCAGATTTTGGCTTCACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACTTAAGACTCTATTTGAGATTGTTTTATTTGAGGACTGTGGCAACCAATGGAGTCTCAGCAGACCAATGCTGAGCTTAATTCTTATCAGTGAGCAGgtgacagtttctacctctctgatttcatgtttttcttgtttgtttctttattctattaaattctattgttatattaaattccaagttccttgtggctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctctct