Sequence
atgc intronic sequence ATGC exonic sequenceAAAATTTATCCAGTTCCAGCTCACTGTTAATGTTGCAGCTCTTATTATAAATGTTGTTGCATCAGTTTCCTCTGGTGATGTTCCTTTAAATGCAGTGCAGgttacactctctctcagttgatgaatttttattttctaagttgtgaaatgttactttgtgaaaccttatttggaagtttatgtttacttgtttattttgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 28
lower sequence: GRMZM5G893864_T01 (Zea mays), 5'ss of exon 6
AAAATTTATCCAGTTCCAGCTCACTGTTAATGTTGCAGCTCTTATTATAAATGTTGTTGCATCAGTTTCCTCTGGTGATGTTCCTTTAAATGCAGTGCAGgttacactctctctcagttgatgaatttttattttctaagttgtgaaatgttactttgtgaaaccttatttggaagtttatgtttacttgtttattttgg----------
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AAAGTTTATTCAGTTCCAGCTTACCGTAAATGTTGCAGCTCTTGTCATCAATGTTGTTGCTGCTGTTTCCTCAGGAAATGTTCCTCTAAATGCTGTTCAGgtt------tggataaacatatgtagtatgattttttaaat----aatcactgctatattaaataacatctattcgtctgtattggtattttaagtttttaacccaagag
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 28
lower sequence: GLYMA07G00630.2 (Glycine max), 5'ss of exon 26
AAAATTTATCCAGTTCCAGCTCACTGTTAATGTTGCAGCTCTTATTATAAATGTTGTTGCATCAGTTTCCTCTGGTGATGTTCCTTTAAATGCAGTGCAGgt---tacactctct-ctcagttgatgaatttttattttctaagttgtgaaatgttactttgtgaaaccttatttggaagtttatgtttacttgtttattttgg
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GAAATTTATCCAGTTTCAGCTCACGGTTAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCAATAACTTCTGGTGATGTTCCTTTAAATGCAGTGCAGgtacgtatctcctcttctctatttttgtgtcacaccttacactctaatgagacctaataaagtggaaagggggtgaaaaacaggaaat--cctatcagattt--
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 28
lower sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 29
AAAATTTATCCAGTTCCAGCTCACTGTTAATGTTGCAGCTCTTATTATAAATGTTGTTGCATCAGTTTCCTCTGGTGATGTTCCTTTAAATGCAGTGCAGgt---tacactctctctcagttgatgaatttttattttctaagttgtgaaatgttactttgtgaaaccttatttggaagtttatgtttacttgtttattttgg
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GAAATTTATCCAGTTCCAGCTTACAGTTAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCAATAACTTCTGGTGATGTTCCTTTAAATGCAGTGCAGgtacgtatatcctc-ctctattttttagtcacgccttacactctaatgagacctaatagagcggaaagagggtgaaaaacaggcaat--cttattagatttgg
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 28
lower sequence: GLYMA13G44990.1 (Glycine max), 5'ss of exon 28
AAAATTTATCCAGTTCCAGCTCACTGTTAATGTTGCAGCTCTTATTATAAATGTTGTTGCATCAGTTTCCTCTGGTGATGTTCCTTTAAATGCAGTGCAGgttacactctctctca-gttgatgaatt--tttattttctaagttgtgaa--atgttactttgtgaaaccttatttggaagtttatgtttacttgtttattttgg
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GAAATTTATTCAGTTCCAACTCACTGTTAATGTTGCTGCTCTTGTAATAAATGTAGTGGCAGCAATATCTTCTGGTGATGTTCCTTTAAATGCTGTACAGgtaccctgccctctaatattgttgaatgaatatatgattcaaattacagatagagtcacatttacaatacctgcgtttacccctctcttactgtgtatag-----
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 28
lower sequence: GLYMA15G00340.1 (Glycine max), 5'ss of exon 28
AAAATTTATCCAGTTCCAGCTCACTGTTAATGTTGCAGCTCTTATTATAAATGTTGTTGCATCAGTTTCCTCTGGTGATGTTCCTTTAAATGCAGTGCAGgttacactctctctcagttgatgaatttttattttctaagttgtgaa--atgttactttgtgaaa-ccttatttggaagtttatgtttacttgtttattttgg
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GAAATTTATTCAGTTCCAGCTCACTGTTAATGTAGCTGCTCTTGTAATAAATGTTGTGGCCGCAATATCTTCTGGTGATGTTCCTTTAAATGCTGTACAGgtaccctgcattgtcatcttctattgttgaatagtatatgatatgattcaaataacaagataagagtcacatttacaatattcgatttgtgtatag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110357398|gb|EC920911.1|EC920911EST: ATGTTGTTGCATCAGTTTCCTCTGGTGATGTTCCTTTAAATGCAGTGCAG CTTCTATGGGTTAACCTTATCATGGATACTCTTGGAGCACTTGCATTGGCT
genomic: ATGTTGTTGCATCAGTTTCCTCTGGTGATGTTCCTTTAAATGCAGTGCAGgttacactct ... cttggtacagCTTCTATGGGTTAACCTTATCATGGATACTCTTGGAGCACTTGCATTGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAATTTATCCAGTTCCAGCTCACTGTTAATGTTGCAGCTCTTATTATAAATGTTGTTGCATCAGTTTCCTCTGGTGATGTTCCTTTAAATGCAGTGCAGgttacactctctctcagttgatgaatttttattttctaagttgtgaaatgttactttgtgaaaccttatttggaagtttatgtttacttgtttattttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgaaa