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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGCAGCACAAGCCGAGGGCAGACCTCCTCCAGCTTTGAGTGGGAGTGCTGATATTCGACCTCTAAACATAGATGACTTTAAATATGCTCATGAACGGgtaaaaaactaattttagaaaaatgggttgtctttcttttttaatattgttcaaaaacaacattcacctctacaatcttttcttcttcttgcctggaaatag

Basic information

species Vitis vinifera
transcript Vv17s0000g01550.t01
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 27
lower sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 10
AGCTGCAGCACAAGCCGAGGGCAGACCTCCTCCAGCTTTGAGTGGGAGTGCTGATATTCGACCTCTAAACATAGATGACTTTAAATATGCTCATGAACGGgtaaaaaactaattttagaaaaatgggttgtctttcttttttaatattgttcaaaaacaacattcacctctacaatcttttcttcttcttgcctggaaatag
 ||||| ||   | | || || |||||| ||||||| || ||||| ||||| ||||| ||| || ||||||| || || || |||||||||||| ||| ||||            || ||||| |   | |||||| |     ||  |    |||||  | |   |   ||   || ||                       
GGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAAGTGCAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAGgta------------tataaaaaggaaatttctttcatgcaagatccttcctaaaaaataaaaaaataactgtgatattgaagcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71879230|gb|DT028285.1|DT028285
EST:     CTTTAAATATGCTCATGAACGG                         GTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
genomic: CTTTAAATATGCTCATGAACGGgtaaaaaact ... ctggaaatagGTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
EST: gi|110394489|gb|EC959525.1|EC959525
EST:     CTGATATTCGACCTCTAAACATAGATGACTTTAAATATGCTCATGAACGG                         GTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
genomic: CTGATATTCGACCTCTAAACATAGATGACTTTAAATATGCTCATGAACGGgtaaaaaact ... ctggaaatagGTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
EST: gi|110420390|gb|EC986662.1|EC986662
EST:     CTGATATTCGACCTCTAAACATAGATGACTTTAAATATGCTCATGAACGG                         GTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
genomic: CTGATATTCGACCTCTAAACATAGATGACTTTAAATATGCTCATGAACGGgtaaaaaact ... ctggaaatagGTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
EST: gi|71878737|gb|DT027792.1|DT027792
EST:     CTTTAAATATGCTCATGAACGG                         GTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
genomic: CTTTAAATATGCTCATGAACGGgtaaaaaact ... ctggaaatagGTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
EST: gi|71880061|gb|DT029116.1|DT029116
EST:     CTTTAAATATGCTCATGAACGG                         GTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
genomic: CTTTAAATATGCTCATGAACGGgtaaaaaact ... ctggaaatagGTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
EST: gi|71879760|gb|DT028815.1|DT028815
EST:     CTTTAAATATGCTCATGAACGG                         GTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
genomic: CTTTAAATATGCTCATGAACGGgtaaaaaact ... ctggaaatagGTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
EST: gi|71878454|gb|DT027509.1|DT027509
EST:     CTTTAAATATGCTCATGAACGG                         GTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
genomic: CTTTAAATATGCTCATGAACGGgtaaaaaact ... ctggaaatagGTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
EST: gi|71877686|gb|DT026741.1|DT026741
EST:     CTTTAAATATGCTCATGAACGG                         GTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA
genomic: CTTTAAATATGCTCATGAACGGgtaaaaaact ... ctggaaatagGTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAA