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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGGTTTCAATCTCTCTGGGTGCATTAGTGCATCTCATAGAAGTTGGAGGACACCAATTCAGTGAGAGTGATTGGGATACATTGTTGAAAAGCATAAGgtgcttatctcttgttatttctagttatttccatcaatattctctaattaatacttcttgtcatgaccaacag

Basic information

species Vitis vinifera
transcript Vv11s0016g00170.t01
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 27
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 5'ss of exon 24
CAGTGGTTTCAATCTCTCTGGGTGCATTAGTGCATCTCATAGAAGTTGGAGGACACCAATTCAGTGAGAGTGATTGGGATACATTGTTGAAAAGCATAAGgtgcttatctcttgttatttctagttatttccatcaat-attctctaattaat-acttcttgtcatgaccaacag-------
| || ||||||||  |||| || || ||||| ||||||||||| ||||| || |||||||||||||| || || ||||| ||| |  | || ||||| ||||   |  |||  ||| | | |    |||   || |||  | || |  ||  | || | ||    | |  | ||        
CTGTTGTTTCAATTGCTCTTGGAGCTTTAGTTCATCTCATAGAGGTTGGTGGTCACCAATTCAGTGACAGCGACTGGGAAACACTTCTAAAGAGCATTAGgtatct-cctcaagttctattttcccattaaaattaattgtgcttttgttgttcacatattaatgttaatatcacttgtcag

upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 27
lower sequence: GRMZM2G335287_T01 (Zea mays), 5'ss of exon 25
CAGTGGTTTCAATCTCTCTGGGTGCATTAGTGCATCTCATAGAAGTTGGAGGACACCAATTCAGTGAGAGTGATTGGGATACATTGTTGAAAAGCATAAGgtgcttatc----tcttgttatttctagttatttccatcaat--attctctaattaatacttcttgtcatgaccaacag----
| || ||||||||  |||| || || ||||| ||||| || |||||||| || ||||| ||||||||  |||||||||||||||| || || || || ||||  ||       | |||||  | | | || |||  | |  |  ||| | || ||| |  |   |||    | ||   |    
CTGTCGTTTCAATTGCTCTTGGCGCTTTAGTTCATCTGATTGAAGTTGGTGGTCACCAGTTCAGTGATGGTGATTGGGATACATTATTAAAGAGTATTAGgtattttctgaaattttgttcgtaccaattttttttacctttccattatttatttatttgtcactgttgatatcacttgtcag

upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 27
lower sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 27
CAGTGGTTTCAATCTCTCTGGGTGCATTAGTGCATCTCATAGAAGTTGGAGGACACCAATTCAGTGAGAGTGATTGGGATACATTGTTGAAAAGCATAAGgtgcttatctcttgttatttctag-----ttatttccatca-----atatt--ctctaattaatacttcttgtcatgaccaacag
||||||| ||||| ||||| ||||| || ||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||| |  | ||||||||||||||   || | ||  |||||   |     | ||||   | |     ||||   || |||   || | | |  || ||| |  |||
CAGTGGTCTCAATATCTCTTGGTGCTTTGGTGCATCTCATTGAAGTTGGTGGACACCAATTCAGTGAAAGTGACTGGGACACACTACTTAAAAGCATAAGgtgtaaattttttcctattttctgaagattcatttttgttattctaatatcaactgtaaaacattcatttaatcttgatctccag

upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 27
lower sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 27
CAGTGGTTTCAATCTCTCTGGGTGCATTAGTGCATCTCATAGAAGTTGGAGGACACCAATTCAGTGAGAGTGATTGGGATACATTGTTGAAAAGCATAAGgtgcttatctcttgttatttctag-----ttatttccatca-----atattctctaattaatacttctt--gtcatgaccaacag
||||||| ||||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||||||||| | ||| |||||||| ||| | ||||||||||||||   || | ||  |||||   |       ||||   | |     ||||   ||    || | || ||   || ||| |  |||
CAGTGGTCTCAATATCTCTTGGTGCTTTGGTGCATCTCATTGAAGTTGGTGGACATCAATTCAGTGAAAATGACTGGGATACGTTGCTTAAAAGCATAAGgtgtaaattttttcctattttctgaagatccatttttgttattctaatatcaactgtaaaacatttatttaatcttgatctccag