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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCTGAGAACCCAGTTGATTTTATTCATAAGCACCGGATGGCTCTTGAGAGTGAGCATGTCTCTGCACATTTGCATGAATGGATTGATCTCATATTTGGgtaagttttattatctttattggacaaaaattaattttcaccttcatttctattcttgtgttttcattctgtgattttccttctttttgttgcaacaatgatagaagtaaaaaatgatggtcttgctttaaatcaactttttgtggaacattcag

Basic information

species Vitis vinifera
transcript Vv15s0048g01650.t01
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01650.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: LOC_Os02g44380.2 (Oryza sativa), 5'ss of exon 19
GGGCTGAGAACCCAGTTGATTTTATTCATAAGCACCGGATGGCTCTTGAGAGTGAGCATGTCTCTGCACATTTGCATGAATGGATTGATCTCATATTTGGgtaagttttattatctttattggacaaaaattaattttcaccttcatttctattcttgtgttttcattctgtgattttccttctttttgttgcaacaatgataga-agtaaaaaatgatggtcttgctttaaatcaactttttgtggaacattcag
||||||||||||| |||||||| ||   ||| ||| ||| |||||||||||||||  ||||||| || ||||||||||||||||| || || ||||||||||| |||     |||| | |          ||  ||  |||||   ||       ||| ||| |  | || | ||| || | || || ||  ||   ||| | |  |||                                               
GGGCTGAGAACCCTGTTGATTTCATATGTAAACACAGGAAGGCTCTTGAGAGTGATTATGTCTCCGCTCATTTGCATGAATGGATAGACCTAATATTTGGgtacgtt-----atctatgtgctgttcctttttgttgccacctc--ttagctgcattgcgttattttact-taattatc-tactattcgtcccatatatgttggccagt-----------------------------------------------

upper sequence: Vv15s0048g01650.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GRMZM2G044143_T01 (Zea mays), 5'ss of exon 25
GGGCTGAGAACCCAGTTGATTTTATTCATAAGCACCGGATGGCTCTTGAGAGTGAGCATGTCTCTGCACATTTGCATGAATGGATTGATCTCATATTTGGgtaagtttta--ttatctttattggacaaaaattaattttcaccttcatttctattcttgtgttttcattctgtgattttccttctttttgttgcaacaatgatagaagtaaaaaatgatggtcttgctttaaatcaactttttgtggaacattcag
||||||| || |  || |||||| | ||||| || |||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||| || |||||||||  | ||  ||||| |   | |||  |  ||  | |     | ||     || ||     |    |  |||   ||| | || |  |  | | |                                                            
GGGCTGAAAATCATGTGGATTTTGTCCATAAACATCGGAAGGCTCTTGAGAGTGAGCACGTCTCTGCTCATTTGCATGAGTGGATTGATCTAATTTTTGGgtaacctctatattatcctagcttgactcactttcttgtgtttttgcacaaacatcctaacaataatttgatgtaggtttgcatcatgctaataccattg---------------------------------------------------------

upper sequence: Vv15s0048g01650.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GRMZM2G024245_T01 (Zea mays), 5'ss of exon 4
GGGCTGAGAACCCAGTTGATTTTATTCATAAGCACCGGATGGCTCTTGAGAGTGAGCATGTCTCTGCACATTTGCATGAATGGATTGATCTCATATTTGGgtaagttttattatct-ttattggacaaaaattaattttcaccttcatttctattcttgtgttttcattctgtgattttccttctttttgttgcaacaatgatagaagtaaaaaatgatggtcttgctttaaatcaactttttgtggaacattcag
||||| | ||  | ||||||||||| |||| ||| ||||  ||||| |||||||| ||||||||  ||| ||||||||||||||| ||||| ||||||||||| |||   |||| | |||||         |  |  |  |  | |||||   ||||    | || ||      |  ||  || || |||    | || | |||                                                    
GGGCTAAAAATGCTGTTGATTTTATACATATGCATCGGAAAGCTCTCGAGAGTGATCATGTCTCCACACGTTTGCATGAATGGATCGATCTAATATTTGGgtatgtta-gttatgtgttattatgtt----tccacatatatatgcattttccttctaacttatttatct----aacttttttattcttgcaatatcattcatatcctc-----------------------------------------------

upper sequence: Vv15s0048g01650.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: AT2G45540.2 (Arabidopsis thaliana), 5'ss of exon 27
GGGCTGAGAACCCAGTTGATTTTATTCATAAGCACCGGATGGCTCTTGAGAGTGAGCATGTCTCTGCACATTTGCATGAATGGATTGATCTCATATTTGGgtaagttttattatctttattggacaaaaattaattttcaccttcatttctattcttgtgttttcattctgtgattttccttctttttgttgcaacaatgatagaagtaaaaaatgatggtcttgctttaaatcaactttttgtggaacattcag
||||  | |||||||| |||||| | || ||||| || | |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||      |  | ||   | | | |  |   ||| ||  |   ||   | || | | | ||   | | | |  |        |    ||||   |    ||||   |  |   | ||  ||| | |||                    
GGGCCAAAAACCCAGTGGATTTTGTACACAAGCAACGAAGGGCTCTTGAGAGCGAGCATGTATCTGCTCATTTGCATGAATGGATTGATCTCATATTTGGgtaggttttcacccttgaactgatgatatactg-tcagcacatttttccataacttagtttctccttttacttagtgtgttcagcaaaatattcacaagtgtctttgtaagccactaaattgtt-ttttcattcag-------------------