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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtataatttctttaggtgcaattgtttttctttgtggttctatgcactggttgatttcataagccttgttggtatgtgtttgagcag

Basic information

species Vitis vinifera
transcript Vv13s0067g01290.t01
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 26
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagt-ataatttcttta-ggtgca-attgtttttctttgtggttctatgcactggttgatttcataagccttgttggtatgtgtttgagcag
 |||||||||| | |||||||||| ||||| |||||||| ||||| ||||||||  ||||||||||||| |||||||||||||| || ||||| || |||||  ||  || || |  ||    |||  |||| | || ||| |  || | |    |  ||    | |  |   | | ||| |||   |||| |||
AGCTTTGAATGAGCTTTATGTTGAAGAGGAGGACTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAAAAGgtaaagcgattatatgattgtactgcttattgatgttatttttccttttttattttattttgaataactaa--tggctggaatgc-cttgatcag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 26
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagta--taatttctttaggtgca-attgtttttctttgtggttctatgcactggttgatttcataagccttgttggtatgtgtttgagcag
  ||||||||| | |||||||||| ||||| || ||||| ||||| ||||||||  ||||||||||||| |||||||||||||| || ||||| ||||||||  ||    ||  |  ||    |||  |||| | || ||| |  || | |       |||| |   |||   | | ||| |||   |||| |||
ATCTTTGAATGAGCTTTATGTTGAAGAGGAGGATTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAGAAGgtaaagcgattagatgattgtactgcttattgatgttatttttccttttttttttattttgaataactaa---tggctggaatgc-cttgatcag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 3
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtataatt---tctttaggtgcaattgtttttcttt--gtggttctatgc--actggt--tgatttca---taagccttgttggtatgtgtttgagcag
 || ||||||| | |||||||||| |||||||||||||| ||||| ||||||||| |||| |||||||| |||||||| || || || ||||| ||||||||  |  | |      |    ||   | |||||| || ||    ||||   ||||  | || |  || |||||   |||       || |   |  ||||||||
AGCCTTGAATGAGCTTTATGTTGAAGAGGAAGACTATGAGAGACTCCGTGAATCAGTTGACATGCATGACAACTTTGACCAAATAGGTCTTGCCCAGAAGgtacaaaacagccagatgcgcagtgcctattgttgttgttgtaatggtgtgatgcttattgttactgttttcaatttaattacctgtgttcatttcttgagcag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 3
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtataatttctttaggtgcaattgtttttctttgtggttcta--tgcactggttgatttcataagccttgttggtatgtgtttgagcag----------------------
 || ||||| |   |||||||||| ||||||||||| || ||||| ||||||||| ||||||||||||| |||||||| || || || ||||| ||||||||  |  |||      | |  |   | ||  | |   ||  | | |   || | | ||    | ||||    ||  || | | |  || |  |                       
AGCCTTGAACGAACTTTATGTTGAAGAGGAAGACTACGAGAGACTCCGTGAATCAGTTGATATGCATGACAACTTTGACCAAATAGGTCTTGCCCAGAAGgtacaaaatagccagataatcttgcagtgcctattgctgctgctgttgttgtaatcgtgcgatgcatat-tgttactgctttttaatttaataacctgtgtccatttctggagcag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 25
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtataatttctttaggtgc-aattgtttttctttgtggttctatgcactggttgatttcataagccttgttggtatgtgtttgagcag
 ||  ||||||  || ||||||||||||||||||||||| ||| |||| || ||||||||| |||||||||||||||| || || |||||||||||||||||    |  | ||  | |   ||   | | ||||||  |    || || | |     ||  ||  ||    |  |||| |||           
AGCCCTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCAATTGATTTGCATGATAACTTTGACCAAATAGGCCTTGCACAGAAGgttagctgcatttattcttcatgttgactatttttcagttcaattataggaaaccagtggattatta---ttatttggaatgcag--------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 26
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtataatttctttaggtgcaattgtttttctttgtggttctatgcactggttgatttcataagccttgttggtatgtgtttgagcag
 || ||||||| ||| ||||||||||||||||| ||||| ||| |||| || ||||||||| |||| |||||||||||||| || |||||||| || ||||||  | |   |    |||  || || | ||||| |     ||| ||      |     |   || |    | ||  | | || |  ||   
AGCGTTGAATGAGATATATGTTGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTGCACGATAACTTTGATCAAATAGGCCTTGCCCAAAAGgtgtggaaatttgctcttaattggaactattttttt-----gttttagttgtggaaatctcagattattactattactgtatgatgcag---

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 26
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtataatttctttaggtgcaattgtttttctttgtggttctatgcactggttgatttcataagccttgttggtatgtgtttgagcag
 || ||||||| ||| ||||| ||||||||||| ||||| ||| |||| || ||||||||| |||| |||||||||||||| || |||||||| || ||||||  | |   |    |||  || || | |||||     |||||  | ||  |||   || |||  |   |||||  ||  ||| |  ||||
AGCGTTGAATGAGATATATGTCGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTGCACGATAACTTTGATCAAATAGGCCTTGCTCAAAAGgtgtggaaatttgctcttaattggaactattttt-----tggtttca-gctgtgga-aatctca-gattattgttattac-tgtatacgcag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 25
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtataat--ttctttaggtgcaattgtttttctttgtggttctatgcactggttgatttcataagccttgttggtatgtgtttgagcag
 ||  | ||||  || ||||||||||||||||||||||| ||| |||| || || |||||| |||| |||||||| || || || ||||| ||||||||||| |  |  | |  ||||| | ||   | | ||||||  | |  || || | |   | |   ||  ||    |   ||| |||           
AGCCCTTAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCGATTGATTTGCACGATAACTTCGACCAAATAGGCCTAGCACAGAAGgttggctgcattcattcttcatgt-tgactatttttcagt-taattataggaaaccgatagattattattattatctggaatgcag--------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: PP1S147_10V6.1 (Physcomitrella patens), 5'ss of exon 14
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagt-----ataatttct------ttaggtgcaattgtttttctttgtggttctatgcactggttgatttcataagccttgttggtat-gtg---tttgagcag-------------------------------------
|||| ||||     | ||| ||||||||||||| |||||  | ||  | || || ||||||||| ||||||||||||||||||||    | ||||||| |||    |      | ||| ||      ||   | | ||   | |  |   |   | | |  | | ||| |   |||      |||     | |||   |||  | |                                      
GGCTCTGAACAACTTATATATTGAGGAGGAAGATTATGAGCGGCTCAGAGAGTCTATTGATATGTATGATAACTTTGATCAGATTTCAATGGCACAGAGGgtaagttccgtagtcattgctaatcagtttaatactatcaatatcatccatatgtgtttttattagttcacaacatggaaagtgtcaaagttgtgacttttatgtatttcccaggtaaatttgacatgttatatttttttacag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: PP1S452_30V6.1 (Physcomitrella patens), 5'ss of exon 26
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtataatttctttaggtgcaattgtttttctttgtggttctatgcactggttgattt----------cataagccttgttggtatgtgtttgagcag-------------------------------------------------------
|||| | |||||  | ||  |||| || || || || ||  ||||  | || || ||||||||| |||||||||||||||||||     | ||||||  |||  | |     |||  ||  ||  | |  |  | ||  || | ||  |  |   ||    |          ||| |   | | |  |   |  ||||  |                                                        
GGCTCTCAATGGCTTATACATTGAAGATGAGGATTACGAACGACTCAGAGAGTCCATTGATATGTATGATAACTTTGATCAGATGTCAATGGCACAGCGGgt--aattcttcttcactaactgtgagttgtcatgttcatgttccttggtgcccattagcctgcaggtgtggcattaatttggataattgatacttgataactgatagctcttagtatttgtttaattcatgtctttgttttacaaaaccccttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71858842|gb|DT007897.1|DT007897
EST:     AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAG                         ATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
genomic: AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtata ... gtttgagcagATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
EST: gi|71857909|gb|DT006964.1|DT006964
EST:     AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAG                         ATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
genomic: AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtata ... gtttgagcagATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
EST: gi|71888995|gb|DT038050.1|DT038050
EST:     AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAG                         ATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
genomic: AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtata ... gtttgagcagATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
EST: gi|33402568|gb|CF208195.1|CF208195
EST:     AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAG                         ATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
genomic: AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtata ... gtttgagcagATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
EST: gi|30132054|gb|CB917393.1|CB917393
EST:     AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAG                         ATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATA
genomic: AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtata ... gtttgagcagATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATA
EST: gi|30132996|gb|CB918335.1|CB918335
EST:     AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAG                         ATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
genomic: AATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtata ... gtttgagcagATTGAGAAACACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC