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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGCTCAGTTGCAACTATTCTGTATCTTGTTTCTCTACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaaatataatggtgttattgcttcgtcattgcaaaatatatactgcctttcaagatgacttttattttgtttttccccctag

Basic information

species Vitis vinifera
transcript Vv13s0064g00180.t01
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00180.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: LOC_Os05g51790.2 (Oryza sativa), 5'ss of exon 26
GAGCGCTCAGTTGCAACTATTCTGTATCTTGTTTCTCTACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaaatata-atggtgttattgctt----------cgtcattgcaaaatatatact-gcctttcaagatgacttttattttgtttttccccctag-------
||||| |||||| |||| || ||||| ||||| || || |||||||| || |||||||| ||| |||| ||||||||||||||||||||  ||  ||     | | | | || || | |           |   ||  |||||   |||| |  | |  |          |  |   | || |||| |        
GAGCGATCAGTTTCAACCATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCCTTTCGGGTCGTTGATGAGATAAATCAAGgcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggtaactgtttccccgaaattgcag

upper sequence: Vv13s0064g00180.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GRMZM2G440916_T01 (Zea mays), 5'ss of exon 26
GAGCGCTCAGTTGCAACTATTCTGTATCTTGTTTCTCTACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaaatataatggtgttattgcttcgtcattgcaa-----aatatatactgcctttcaagatgacttttattttgtttttccccctag----
||||| || ||  | || ||  |||||||||| || || |||||||| || |||||||||||| |||| ||||||||||||||||||||| |   | ||   ||| |  | ||| || |  |  |   |     ||  | ||  |   ||  || ||   | || |   ||  |||   ||     
GAGCGATCTGTATCGACCATCTTGTATCTTGTGTCACTTCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaa--cacaactgaattgcttcatttctccaactgtatgactgctaacttgtataggtatt-gaggtgg--tctaatgcattcatccgaatatgcag

upper sequence: Vv13s0064g00180.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GLYMA20G34020.1 (Glycine max), 5'ss of exon 27
GAGCGCTCAGTTGCAACTATTCTGTATCTTGTTTCTCTACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaaatataatggtgttattgcttcgtcattgcaaaatatatactgcctttcaaga-tgacttttattttgtttttccccctag
|| ||||||||| |||||||| | ||||||||||| || |||||||| ||||||||||| ||||| || ||||||||||| || ||||||| ||||   | | | |     |||  |||  |||||    | |    ||  || | |||| || |||| | | |||||||  |     
GAACGCTCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAGgtgtgttactgtttgaagaaa--attctttc--cattg----acaccagct--ctctaaagactgtctttgactgtgtttttatcag---

upper sequence: Vv13s0064g00180.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: AT5G15920.1 (Arabidopsis thaliana), 5'ss of exon 2
------------GAGCGCTCAGTTGCAACTATTCTGTATCTTGTTTCTCTACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaaatataatggtgttattgcttcgtcattgcaaaatatat---actgcctttcaagatgacttttattt-tgtttttccccctag--
            ||||| || ||  ||||||| || || || || ||||| |||||||| |||||||| ||||| ||||| ||||||||||| ||||||||| |   ||| | |||   |||| ||  ||     |   ||| | | |   |       ||||  |  |||  |  | |   ||| |   |    
CAATCTGGAGGAGAGCGTTCTGTCTCAACTATCCTTTACCTCGTCTCTCTTCAAGATCTGACAAACTGTCCTTTCAGGGTTGTTGATGAGATTAATCAAGgtaa---aaagtgtaa--atgttttttttttaatgtaa-aaactgtctcgaaacattagtcaaagtctcttaaaaatatacatttgcttgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031040|gb|FQ444867.1|FQ444867
EST:     ACAAGATCTCACAAACTGCCCTTTTAGGCTGGTTGATGAGATAAATCAAG                         GAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
genomic: ACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaa ... ttccccctagGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
EST: gi|351032202|gb|FQ460459.1|FQ460459
EST:     ACAAGATCTCACAAACTGCCCTTTTAGGCTGGTTGATGAGATAAATCAAG                         GAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
genomic: ACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaa ... ttccccctagGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
EST: gi|351031564|gb|FQ459821.1|FQ459821
EST:     ACAAGATCTCACAAACTGCCCTTTTAGGCTGGTTGATGAGATAAATCAAG                         GAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
genomic: ACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaa ... ttccccctagGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
EST: gi|351037685|gb|FQ464126.1|FQ464126
EST:     ACAAGATCTCACAAACTGCCCTTTTAGGCTGGTTGATGAGATAAATCAAG                         GAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
genomic: ACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaa ... ttccccctagGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG