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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGAATTGAAACAGATCCGGCAGACAGAACACAACTACGGATGACAGTTTCCTCAGGGGACCCTACACTAACATTCGAgtatgtattgtcatcattgaaacttttacttttgtgtactctagaaacttgcagtttagcagaatgttctgagattctcataaacag

Basic information

species Vitis vinifera
transcript Vv06s0061g01170.t01
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 26
ATGAGAATTGAAACAGATCCGGCAGACAGAACACAACTACGGATGACAGTTTCCTCAGGGGACCCTACACTAACATTCGAgtatgtattgtcatcattgaaacttttacttttgtgtactctagaaacttgcagtttagcagaatgttctgagattctcataaacag
 | ||||||||||||||||| ||||||||||| || || || ||||| ||| | ||||||||||| ||||||||||| ||||||||    | |  |||   ||||  |   |   ||   | |||  |      ||| || |||  ||||   |||    |  |   
GTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtg--attagtatttccacttaaaggatgacgttgac-agattcaacagcttttgctgaacattcttgtattggtttgcag--

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 26
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 26
ATGAGAATTGAAACAGATCCGGCAGACAGAACACAACTACGGATGACAGTTTCCTCAGGGGACCCTACACTAACATTCGAgtatgtattgtcatcattgaaacttttacttttgtgtactctagaaacttgcagtttagcagaatgttctgagattctcataaacag
   |||||||||||||| || |||||| |||| || || || ||||| ||| | ||||||||||| ||||||||||| ||||||||       |  ||     ||| |    ||    |   |||  ||     ||| || ||   ||||   |||    |  |   
GCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgactgattagttttctatttaaaggatgccatcaacagattctacagcttttgctgatcattcttgtattggtttgcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110703483|gb|EE080368.1|EE080368
EST:     ACACAACTACGGATGACAGTTTCCTCAGGGGACCCTACACTAACATTCGA                         GTTGAAGGAGTTCATCAAAGAGCAATTAGTTAGCATTCCCACAGCTACCCG
genomic: ACACAACTACGGATGACAGTTTCCTCAGGGGACCCTACACTAACATTCGAgtatgtattg ... tcataaacagGTTGAAGGAGTTCATCAAAGAGCAATTAGTTAGCATTCCCACAGCTACCCG