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TCTCACGGAAAAGTCTGATGTCTACAGCTATGGAATTGTTCTACTTGAGCTGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaatcgcttttggtttctacttgaaccttcgtgtctattgaattccatttagcatgagaaattttttatgctagacgacaaatgatagttaatc...
species | Vitis vinifera |
transcript | Vv04s0008g01970.t01 |
intron # | 26 |
splice site | 5' |
intron type | U2 |
EST: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|352786698|gb|FQ479905.1|FQ479905
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: CGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCTATCATCTG ATCCTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|351043857|gb|FQ452651.1|FQ452651
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTAATCCAAA-CAACCA-CAATGCTGTGATGGAGACTGTTGATCCTGAEST: gi|351054408|gb|FQ450491.1|FQ450491
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTA-TCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGA
EST: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|351047766|gb|FQ458986.1|FQ458986
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|351039249|gb|FQ457924.1|FQ457924
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: CGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCCAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|351048041|gb|FQ441213.1|FQ441213
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|351048270|gb|FQ442240.1|FQ442240
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|351045309|gb|FQ451757.1|FQ451757
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|352790304|gb|FQ481503.1|FQ481503
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|352798821|gb|FQ478456.1|FQ478456
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|351035908|gb|FQ463753.1|FQ463753
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: CGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|351048645|gb|FQ448919.1|FQ448919
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATEST: gi|352786929|gb|FQ481304.1|FQ481304
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGAT
EST: CGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTG ATCCTATCCAAA-CAGCCAACAATGCTGTGAT
genomic: TGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaat ... cttgccttagATCTTATCCAAAACAACCAACAATGCTGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCACGGAAAAGTCTGATGTCTACAGCTATGGAATTGTTCTACTTGAGCTGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaatcgcttttggtttctacttgaaccttcgtgtctattgaattccatttagcatgagaaattttttatgctagacgacaaatgatagttaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacgacaa