Sequence
atgc intronic sequence ATGC exonic sequenceGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGgttttctttgcttccctattttctggaatttatgattataattcaatatgcagtgtggggctttgctttttaactttagtcgcttctctgtgttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 25
GATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGgttttctttgcttccctattttctggaatttatgattataattcaatatgcagtgtggggctttgctttttaactttagtcgcttctctgtgttgcag
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GATTCTGAAAGTAATATTGGCAAAGGAAGAGTTGGCTCCAGGTATTGATATGGATTCTCTTGCCACTATGACCGATGGATATTCAGGAAGTGACCTGAAGgtatgcttgataatgatgcgcttcccaaataacacaagtgattggaaatg----gttgcacaattttcactgacttgcttgtgttcccag--------
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA17G13850.1 (Glycine max), 5'ss of exon 23
GATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGgttttctttgcttccctattttctggaatttatgattataattcaatatgcagtgtggggctttgctttttaactttagtcgctt--ctctgtgttgcag
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AATATTGAAAGTTATACTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTAGATGCAGTTGCAAGTATGACCGATGGATATTCCGGAAGTGATCTTAAGgttgctggtgtt---ctttttcctg----ttaccttgttcttttgaaat------tgttactattttattcaacatttgatgcttgcccttgtactgcag
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA05G03270.2 (Glycine max), 5'ss of exon 21
GATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGgtt------------ttctttgcttccctattttctggaatttatg--attataattcaatatgcagtgtggggctttgctttttaactttagtcgcttctctgtg-ttgcag
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AATATTGAAAGTTATCCTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGgttgctggtgttctttttcctgttaccttattctttgaaattaatgttactattattcaatatttgatgc------ttgcccttatactgcaga-atttgtgtgtaactgcag
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA05G03270.1 (Glycine max), 5'ss of exon 21
GATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGgttttctttgcttccctattttctggaatttatgattataattcaatatgcagtgtggggctttgctttttaactttagtcgctt--ctctgtgttgcag
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AATATTGAAAGTTATCCTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGgttgctggtgtt---ctttttcctgttacct-----tattctttgaaat-taatgtta----ctattattcaatatttgatgcttgcccttatactgcag
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 25
GATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGgttttctttgcttccctattttctggaatttatgattataattcaatatgcagtgtggggctttgctttttaactttagtcgcttctctgtgttgcag
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AATATTGAAAGTTATACTTGAAAAAGAGGACTTGTCTTCTGATATTGATATGGATGCAATTGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGgttatgagtgttcctttttaacccaatactttt--tttaaattaag---gttatgggtgccttcatgcttgctcttttattgcag-------------
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 8
GATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGgttttctttgcttccctattttctggaatttatgattataattcaatatgcagtgtggggctttgctttttaactttagtcgcttctctgtgttgcag
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AATATTAAAAGTTATACTGGCAAAAGAGGACTTGTCTTCTGATATTAATATGGATGCAATTGCAAGTATGACTGATGGATATTCCGGAAGCGATCTAAAGgttatgggtgttcctttttattt---aacccaatactttttttaaattaaggttatggg----tgccttcatgctt-----gctcttttat--tgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110420390|gb|EC986662.1|EC986662EST: TGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAG AATCTTTGTGTAACTGCTGCACATCGTCCTATCAGAGAGATACTGGNNNNN
genomic: TGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGgttttctttg ... tgtgttgcagAATCTTTGTGTAACTGCTGCACATCGTCCTATCAGAGAGATACTGGAAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGgttttctttgcttccctattttctggaatttatgattataattcaatatgcagtgtggggctttgctttttaactttagtcgcttctctgtgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA