Sequence
atgc intronic sequence ATGC exonic sequenceATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgtgacttttcgtatttacaattatgtaaatagagctagggcttacttcatctttatattttgcttaagatataaggtgtgtaattcaaggcatatgttct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: LOC_Os10g35290.1 (Oryza sativa), 5'ss of exon 24
ATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgtga-----cttttcgtatttacaattatgt-aaatagagctagggct-tacttcatctttatattttgcttaagatataaggtgtgtaattcaaggcatatgttct
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TCTATATAGTGGAGTTTTTGGCACTGAGATGAAATGTGAGATTTTCCTTGGACCTGTATACTATCAACGCCTTCGTCATATGGTCTCAGACAAATTTCAGgtgggcaatcattatttgtgtaccatcttattatgtatagttaaagtcgttatctggcttatttttcctccttttctattcgatatcggattgaagatct-------
upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GRMZM2G388892_T01 (Zea mays), 5'ss of exon 26
ATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgtgact-tttcgtatttacaattatgtaaatagagctagggcttacttcatctt-tatattttgcttaagatataaggtgtgt---aattcaaggcatatgttct
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CCTTTATAGTGGAGTTTTTGGCACTGAGATGGACTGTGAGATTTTCATCGGACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattttttgttctatattaaacgc-tacttcaatattttcatgcaccctatacccatcgagttagcccttaaatttttttaaaatgaatgaggatg----
upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA13G26190.1 (Glycine max), 5'ss of exon 29
ATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgtgacttttcgtatttacaattatgtaaatagagctagggcttacttcatctttatattttgcttaagatataaggtgtgtaattcaaggcatatgttct----
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TCTATACAGTGGTGTTTATGGAACAGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAGCGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaa----caaattcactgttttttacttcctataaaaccatcagcgaaaatgatactttccttattttctgtgttgacacattaaaaatgtttggctatcta
upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA17G23500.2 (Glycine max), 5'ss of exon 3
ATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgtgactt--ttcgtatttacaattatgtaaatag--agctagggcttacttcatctttatattttgcttaagatataaggtgtgtaattcaaggcatatgttct
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TCTATATAGTGGTGTTTATGGAACGGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaactaattcactgttttgacttcctatataaccaccagcaaaatgatacttctccatgtttt-ctgaaaatgttaggctttctagatagtggttgtga---
upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: AT1G29940.1 (Arabidopsis thaliana), 5'ss of exon 26
ATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgt-----gacttttcgta----------tttacaattatg-taaatag-----agctagggcttacttcatctttatattttgcttaagatataaggtgtgtaattcaaggcatatgttct
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ATTGTATAGTGGGTATTTAGGAGTAGAACTGAAGTGTGAGATATTTATGGGGCCTGTTTACTACCAGAGACTGCGTCACATGGTCTCAGACAAATTCCAGgtttttcgacccttctggcttcatttcttttatcatcctgacatatagtctccaactggcacttgtctcatcttcgtgctatatctgaatcataatac-tctggcttacag----------
upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: EFJ04457 (Selaginella moellendorffii), 5'ss of exon 25
ATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgtgacttttcgtatttacaattatgtaaatagagctagggcttacttcatctttatattttgcttaagatataaggtgtgtaattcaaggcatatgttct
||||||| || || || || |||||||| |||||||| || || || ||| ||||||||||||||||| || ||||| || ||||| |||||||| ||| | | | || |||| | || | ||| |||
TATGTACAGCGGTTTGCTAGGAACGGAACTCACCTGTGAGATCTTCATCGGTGTTGTGTATTATCAGCGACTGCGACATATGGTTTCGGACAAGTTTCAGgtaactca----actcggagaactgaaaatcggattaatgtggtctttatcccag---------------------------------------------
upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: EFJ24096 (Selaginella moellendorffii), 5'ss of exon 12
ATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgtgacttttcgtatttacaattatgtaaatagagctagggcttacttcatctttatattttgcttaagatataaggtgtgtaattcaaggcatatgttct
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TATGTACAGCGGTTTGCTAGGAACGGAACTCACCTGTGAGATCTTCATCGGTGTTGTGTATTATCAGCGACTGCGACATATGGTTTCGGACAAGTTTCAGgtaactcc----acttggagaactgaaaatcggattaatgtggtctttatcccag---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30255514|gb|CB971646.1|CB971646EST: GACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAG GTTCGCTCCACTGGAACGGTAGACCAGGTTACTCGACAACCTATTAAAGGA
genomic: GACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgtgacttttc ... tgtcatgcagGTTCGCTCCACTGGAACGGTAGACCAGGTTACTCGACAACCTATTAAAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgtgacttttcgtatttacaattatgtaaatagagctagggcttacttcatctttatattttgcttaagatataaggtgtgtaattcaaggcatatgttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataga