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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag

Basic information

species Vitis vinifera
transcript Vv13s0067g01290.t01
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 25
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgttt-ttgtttgtg-ctggcttttttgtt--tcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
|||||| ||  |||||||||||||||||||||| ||||| ||||| ||||| ||||| |||||  | || |||||  | || || ||||||||||| ||||||| ||  || || | ||   || | ||  ||  |   | ||  ||||    |   |  |    |  || | | ||       ||| |  |                                  
GCACTTCTATCTGCAAGAGCATCCTGATCTCATCAATGACCTTCTCAATGTACTTGCGCTTCGTTTGGATCATACAAGAGTCGTGGACATAATGCGCAAGgtttgtttcttatggcagggccttctattggtctatcagttttgctctgtttcaaaattttgaactgtttaattatt------atttgtacag---------------------------------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 25
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgttt-ttgtttgtg-ctggcttttttgtt------tcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
|||||| ||  |||||||||||||||||||||| ||||| ||||| ||||| || || |||||  | || |||||  | || || ||||||||||| ||||||| ||  || || | ||   || | ||      ||  || | || | | | ||   | | |  | |||| ||     || || |                                            
GCACTTCTATCTGCAAGAGCATCCTGATCTCATCAATGACCTTCTCAATGTACTCGCGCTTCGTTTGGATCATACAAGAGTCGTGGACATAATGCGCAAGgtttgtttcttatggcagggccttctattggtctatcagttttgctccgtttcaaaattttgaactatttcattattctttgtacag-------------------------------------------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 2
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
 ||||| || ||||||||||||||||||||||| |||||| | || |||||||||||||||||  |||| |||||  | || || ||||||||||| ||||||    | ||    |   |||   |||||||    |   ||    | ||     | ||||||    | || |    |  | |   |||| | ||| |   || | ||| |   |       
TCACTTCTATTTGCAAGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatggaaattt--atttccttagcgcacttt---gaatagaagccctgtttca--aattccttccaaaatct---tactgtcttgtt---gc-tctttggacag-------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 10
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaag----tatgttacttgtttccttgactct---tctagacgtttatgtactcttttggttatgcgttttttgttggattccag---------------------------------------------------------------------
 || ||||| ||||||||||||||||||||||| |||||| | ||||| ||||||||||||||  |||| || ||  | || || ||||||||||| |||||     | ||        | | | | | |  |   |||    |  |     | | | | ||  | ||   | |||   ||| |  | |  |         |||| |   |  | ||||   |    |                                                                      
TCAGTTTTATTTGCAAGAGCATCCTGATCTCATCAATGATATGCTAAACGTGCTTGCACTTCGTTTAGATCACACCAGAGTTGTAGACATAATGCGCAAGgtaagcatctgattgaaaatctatttctgcagtgcactttgaatagaagccctgtttcaattcctcccaaaaatctgattcttgttgctctttggacaggctggtcagttgcatcttgtgaaaccatatatggttgcaattcagagtaacaatgtctctgccatgaatggagccttgaatgagctttatgtctgagag

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 24
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
 ||||||||  |||||||||||||||||||||| |||||| | ||||| ||||||||||||||  |||| || ||    || || ||||||||||| ||||||    | ||   ||    | |   |||||    |   |||   |   | |   | ||||||  |  |    | | |   | ||      |  |  ||   |                   
TCACTTTTATCTGCAAGAGCATCCTGATCTCATCAATGATATGCTAAACGTGCTTGCACTTCGTTTAGATCACACCATAGTTGTAGACATAATGCGCAAGgttagcatctg-attgaaaatcta--ttcctgcagtgcactttgaatagaagc--cctgtttcaattccgtcccaaaaatctgattcttgttgctctttggacag-----------------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 2
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
 ||||| || ||||| ||||||||||||||||| |||||| | || |||||||||||||||||  |||| |||||  | || || ||||||||||| ||||||    | ||        |||   |||||||    |   ||      ||     | ||||| |      ||||        | || |||  | | |||     | ||| |   |       
TCACTTCTATTTGCAGGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatgaaaattt--atttccttagcgcacttt---ggatagaagccctgttttcaaattccttcccccaaaatctg-acttgtcttgttgc---tctttggacag-------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 25
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtt--tttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
 ||||| |||||| |||||||||| ||||| || |||||| |||| || || ||||||||||| || |||||| | ||||| |||||||| |||||||||||    |  || ||| |     |||  ||   | |    |  |      | |||  |    | |  | |     |  |  | || || | || |                              
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcattagtggtaaaaatttaattagatattagttgtt------gcatgccataactctaatgggaaacttca--ctttaatatgctatag----------------------------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 25
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
 ||||| |||||| |||||||||| ||||| || |||||| |||| || || ||||||||||| || |||||| | ||||| |||||||| |||||||||||     |   |  ||||        || | ||     ||   ||  | |||  |      |  | |    ||  |    || || | || |                              
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtagg-atgaatattggcaaa---aatttcattagatatcagttgttgcatgccataacactaatgggaaatttca----ttgatatgctatag----------------------------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 24
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
 ||||| || || ||||||||||| ||||| || |||||| || | ||||| ||||||||||| || || ||| | ||||| |||||||| ||||| |||||     ||  | ||| |     | |    ||  || ||  | |  |   ||||     ||||  |||    | |   |   | ||   | || | |                         
TCACTTCTATTTACAAGAGCATCCAGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGgtagc-attaatactgtcaacaatttcattttagtttttactttataacctgttttccatttcactgatgaatattttc-cctgtgatgtattatag-------------------------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 24
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
 || || || || ||||||||||| ||||| || |||||| || | ||||| ||||||||||| || || ||| | ||||| |||||||| ||||| |||||     ||  | ||| |     | |   |||  || ||  | |  |   ||||     ||||    |||||   |          || | |    || |||  || |              
TCATTTCTATTTACAAGAGCATCCGGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGgtagc-attaatactgtcaacaatttcatcttaatttttactttataacctgttttccatttc----actctatgaa---------tattttccctgtgatgtattatag------------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 25
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttctt--cttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
|||||| ||||||||||||||||| ||| | || || |||||||| || || |||||  | ||  |||||||||||||||| ||||| |||||||||||||||      ||  |||     |||||||  ||   |     |  ||||  ||  ||||||      | |  |||||| ||  |                                         
GCACTTCTACTTGCAAGAGCATCCGGATATAATCAACGATCTTCTCAACGTACTTGCGTTGCGGTTAGACCATACTCGTGTTGTTGATATAATGCGGAAGgttagaagctg-actgatgactttgtttttttctataaaaacaactgagctacattacttaacaattggtttcttct-gatctcag--------------------------------------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 25
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtat-gttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
 ||||| |||||||||||||| |||||| | || || |||||||| ||||||||||| || ||  |||| || || ||||| ||||| || ||||| ||||||   |     |||| |  ||   |||  | | ||||  |    |  |||    | | | ||      || |    || | |||| |  | |||  | | |  |                  
TCACTTCTACTTGCAAGAGCACCCTGATATAATCAACGATCTTCTCAATGTGCTTGCTCTGCGGTTAGATCACACGCGTGTCGTTGATATTATGCGCAAGgttagag-----gctgaccattg-atttaatattttctgttaaaaacttatcaccagtggcttaacaatctatatctgatgattatttcttgtttctgatctcag------------------

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: EFJ13237 (Selaginella moellendorffii), 5'ss of exon 25
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag
 ||||| ||  | ||||||||||| || ||| | || |||||  |||  ||  | || |  || || || || ||||||||||| ||||||||||| ||||||| |||||    |  |||      ||  |  |  |||  |||| ||                                                                          
CCACTTCTATCTTCAAGAGCATCCCGACCTCTTGAACGATCTGTTAATGGTCTTAGCTCCCCGTGTCGATCACACTCGTGTGGTAGACATAATGCGCAAGgtttgtgttttgattctcttgccgcgtttgtgacacctttgtctgcag--------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71858842|gb|DT007897.1|DT007897
EST:     TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAG                         GCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGCAAC
genomic: TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgttt ... tggattccagGCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|71857909|gb|DT006964.1|DT006964
EST:     TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAG                         GCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGCAAC
genomic: TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgttt ... tggattccagGCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|71888995|gb|DT038050.1|DT038050
EST:     TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAG                         GCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGTAAC
genomic: TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgttt ... tggattccagGCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|33402568|gb|CF208195.1|CF208195
EST:     TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAG                         GCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGTAAC
genomic: TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgttt ... tggattccagGCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|30132054|gb|CB917393.1|CB917393
EST:     TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAG                         GCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGCAAC
genomic: TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgttt ... tggattccagGCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGTAAC
EST: gi|30132996|gb|CB918335.1|CB918335
EST:     TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAG                         GCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGCAAC
genomic: TGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgttt ... tggattccagGCAGGTCACCTTCATCTTGTGAAGCCATATATGGTTGCAGTTCAGAGTAAC