1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
TTGTGAGCTTTGAAGATGGCAGTGTGGGTGTTCTAACTGCTTCAACGCTTAGATCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAGgtgcctatttttctgaattatttacaaaccatgatgatgaataccattttccctttttccctattcactttccttctatgtatctaatgatacgattttgcag
species | Vitis vinifera |
transcript | Vv11s0016g05620.t01 |
intron # | 25 |
splice site | 5' |
intron type | U2 |
EST: AGATCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAG CTTGAGAGTGTACCCTCTCGTCGTTGCGGCACATCCATCTGAACCTAATCAEST: gi|71889426|gb|DT038481.1|DT038481
genomic: AGATCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAGgtgcctattt ... gattttgcagCTTGAGAGTGTACCCTCTCGTCGTTGCGGCACATCCATCTGAACCTAATCA
EST: AGAGCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAG CTTGAGAGTGTACCCTCTCGTCGTTGCGGCACATCCATCTGAATCTAATCAEST: gi|30134210|gb|CB919548.1|CB919548
genomic: AGATCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAGgtgcctattt ... gattttgcagCTTGAGAGTGTACCCTCTCGTCGTTGCGGCACATCCATCTGAACCTAATCA
EST: AGATCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAG CTTGAGAGTGTACCCTCTCGTCGTTGCGGCACATCCATCTGAACCTAATCAEST: gi|161719514|gb|FC067700.1|FC067700
genomic: AGATCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAGgtgcctattt ... gattttgcagCTTGAGAGTGTACCCTCTCGTCGTTGCGGCACATCCATCTGAACCTAATCA
EST: AGATCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAG CTTGAGAGTGTACCCTCTCGTCGTTGCGGCACATCCATCTGAACCTAATCAEST: gi|30131041|gb|CB916380.1|CB916380
genomic: AGATCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAGgtgcctattt ... gattttgcagCTTGAGAGTGTACCCTCTCGTCGTTGCGGCACATCCATCTGAACCTAATCA
EST: AGATCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAG CTTGAGAGTGTACCCTCTCGTCGTTGCGGCACATCCATCTGAACCTAATCA
genomic: AGATCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAGgtgcctattt ... gattttgcagCTTGAGAGTGTACCCTCTCGTCGTTGCGGCACATCCATCTGAACCTAATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGAGCTTTGAAGATGGCAGTGTGGGTGTTCTAACTGCTTCAACGCTTAGATCCAGATGTCGAATCAATCCTACTGCTTATTTACCTCCTAATCCAAGgtgcctatttttctgaattatttacaaaccatgatgatgaataccattttccctttttccctattcactttccttctatgtatctaatgatacgattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG