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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTGACCGGGTGCTCTCGAGGCCCACTGCTTGGATTCAAATACCTTGAGCCTTTATTTTGCATACAAAGgtaattggtccttcaaattcgtttgctatgttttttttctagatttcctttttccttttcaactttatgaaatttgttgtttgactgttcatatag

Basic information

species Vitis vinifera
transcript Vv05s0077g00470.t01
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00470.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA09G03680.1 (Glycine max), 5'ss of exon 12
GTTTGTGACCGGGTGCTCTCGAGGCCCACTGCTTGGATTCAAATACCTTGAGCCTTTATTTTGCATACAAAGgtaa-----ttggtccttcaaattcgtttgctatgttttttttctag-atttcctttttccttttcaact-------ttatgaaat----ttgttgtttgactgttcatatag
||||||||| || |||||||| || ||| ||||||||||| |||| ||||| ||||| |||| |||||||||||||     |||||  |   |     ||||||    ||  ||||||  |   | | | |  ||| ||          | |   |||    ||||    || || ||| | |||
GTTTGTGACAGGTTGCTCTCGGGGACCATTGCTTGGATTCCAATATCTTGAACCTTTGTTTTTCATACAAAGgtaaatgctttggttgtattacaatatttgctccaattgatttctaccaaggcttgtatattttacagacaaaaggatcacagaatggaattgtctgatgtctcttcttgtag

upper sequence: Vv05s0077g00470.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA07G36390.1 (Glycine max), 5'ss of exon 24
GTTTGTGACCGGGTGCTCTCGAGGCCCACTGCTTGGATTCAAATACCTTGAGCCTTTATTTTGCATACAAAGgtaattggtccttc--aaattcgtttgctatgttttttt---tctag-atttcctttttccttttcaactttatgaaatttgttgtttgactgt--tcatatag----------------------------------------------------
||||||||| || |||||||| || ||| ||||||| |||  ||| ||||| ||| | |||||||||||||||| | || | || |  |||||   ||   || ||| |||    |||| |||   |||   |  |   |||  |     ||| || ||   || |  | || ||                                                     
GTTTGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctgctacagaaattatgttctgatatttatttaatgctagcattaattttacacactattactcaagtggttttctttttcttctatgattatgtatatctggaagacaagaataacagattggaattgtctgatgtttcttctcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161710134|gb|FC061032.1|FC061032
EST:     GGCCCACTGCTTGGATTCAAATACCTTGAGCCTTTATTTTGCATACAAAG                         GGCTGCTGGTAGTGCTTCTGAAGAAGCTCTTGACCGGTTACCAACATCTGC
genomic: GGCCCACTGCTTGGATTCAAATACCTTGAGCCTTTATTTTGCATACAAAGgtaattggtc ... gttcatatagGGCTGCTGGTAGTGCTTCTGAAGAAGCTCTTGACCGGTTACCAACATCTGC
EST: gi|45770686|gb|CN006538.1|CN006538
EST:     GGCCCACTGCTTGGATTCAAATACCTTGAGCCTTTATTTTGCATACAAAG                         GGCTGCTGGTAGTGCTTCTGAAGAAGCTCTTGACCGGTTACCAACATTTGC
genomic: GGCCCACTGCTTGGATTCAAATACCTTGAGCCTTTATTTTGCATACAAAGgtaattggtc ... gttcatatagGGCTGCTGGTAGTGCTTCTGAAGAAGCTCTTGACCGGTTACCAACATCTGC