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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGATCTGGGATCCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAAgtatttactccacaacccatattctttaatttttgctgattccttttttccaactggtttttttcctttcctttctctttttttttggctactatgatttaagtatttgtctttacattaaattactgattttcctttcgcttttggatctctacatag

Basic information

species Vitis vinifera
transcript Vv17s0000g03950.t01
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g03950.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA05G35210.1 (Glycine max), 5'ss of exon 7
GTGAAGATCTGGGATCCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAAgtatttactc-cacaacccatattctttaatttttgctgattccttttttccaactggtttttttcctttcctttctctttttttttggctactatgatttaagtatttgtctttacattaaattactgattttcctttcgcttttggatctctacatag
|| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||| | ||  || ||| |||    || |||   |   |  |  | |     |||    || |  | | |  |||| | | | |||||   | | |                                                                       
GTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACTAGgttcttcctctcactcatcaaatttcctgtatggttttcaacatctttgaataagtaatgtgtaaccttgcttctgtctttaaatgtag-----------------------------------------------------------------------

upper sequence: Vv17s0000g03950.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA08G04510.1 (Glycine max), 5'ss of exon 24
GTGAAGATCTGGGATCCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAAgtatttactc-cacaacccatattcttta-atttttgctgattccttttttccaactggtttttttcctttcctttctctttttttttggctactatgatttaagtatttgtctttacattaaattactgattttcctttcgcttttggatctctacatag
|| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||| | ||  || ||| |||     | |||   |  ||  |||   |   ||||     |      |  | |   | | ||  ||| | |||     ||                                                                    
GTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGCCATACTAGgttctttctctcactcattaaatttcctgtatggttgtcaacatctttgaataagtaaaataatgtgaatcctttcttctgtctttaaatgtag-------------------------------------------------------------------

upper sequence: Vv17s0000g03950.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: AT1G49040.1 (Arabidopsis thaliana), 5'ss of exon 24
GTGAAGATCTGGGATCCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAAgtatttactccacaacccatattctttaatttttgctgattccttttttccaactggtttttttcctttcctttctctttttttttggctactatgatttaagtatttgtctttacattaaattactgattttcctttcgcttttggatctctacatag
|| || || |||||||| | ||| ||||||||||||||| | ||||||||||||||||||||   ||||  |||           |||  ||| ||     ||||  || |          ||||||||   ||  ||| || | | |  ||| | || | |    ||   ||   ||            ||  ||||| ||||   ||| ||| |        
GTTAAAATTTGGGATCCAAGTCTGCGTGGTTCTGAACTTCGAGCAACTTTGAAAGGACATACTGGgtatacact-----------atttctta-ttcaccttgatggctctcgggagttatgtttttttttgttaatttttcatatgtggtggtttctttaac---agcgcttccttt------------cttgttttcttttcaacttttgatgtag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110367943|gb|EC931898.1|EC931898
EST:     CCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAA                         GACTGTCCGTGCAATAAGTTCTGATCGTGGGAAAGTGGTATCAGGATCTGA
genomic: CCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAAgtatttactc ... ctctacatagGACTGTCCGTGCAATAAGTTCTGATCGTGGGAAAGTGGTATCAGGATCTGA
EST: gi|110410864|gb|EC976558.1|EC976558
EST:     CCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAA                         GACTGTCCGTGCAATAAGTTCTGATCGTGGGAAAGTGGTGTCAGGATCTGA
genomic: CCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAAgtatttactc ... ctctacatagGACTGTCCGTGCAATAAGTTCTGATCGTGGGAAAGTGGTATCAGGATCTGA